Analysis of interatomic Contacts of Structural Units in PDB entry:
7RYT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7RYT entry

There are 12 chains in PDB entry 7RYT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 9	GLY 156
A	MET 158	ASP 372
B	THR 8	GLY 156
B	MET 158	GLY 375
C	GLN 9	GLY 156
C	MET 158	GLU 374
D	GLN 9	GLY 156
D	MET 158	GLU 374
E	THR 8	GLY 156
E	MET 158	ASP 372
F	GLN 9	GLY 156
F	MET 158	GLU 374

There are 90 helices in PDB entry 7RYT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	122	126	Right-handed 310
Helix 2	AA2	A	130	144	Right-handed alpha
Helix 3	AA3	A	157	170	Right-handed alpha
Helix 4	AA4	A	187	203	Right-handed alpha
Helix 5	AA5	A	204	211	Right-handed 310
Helix 6	AA6	A	219	235	Right-handed alpha
Helix 7	AA7	A	236	245	Right-handed alpha
Helix 8	AA8	A	253	257	Right-handed 310
Helix 9	AA9	A	260	275	Right-handed alpha
Helix 10	AB1	A	278	291	Right-handed alpha
Helix 11	AB2	A	300	307	Right-handed alpha
Helix 12	AB3	A	324	335	Right-handed alpha
Helix 13	AB4	A	348	350	Right-handed 310
Helix 14	AB5	A	351	356	Right-handed alpha
Helix 15	AB6	A	356	372	Right-handed alpha
Helix 16	AB7	B	122	126	Right-handed 310
Helix 17	AB8	B	130	146	Right-handed alpha
Helix 18	AB9	B	157	170	Right-handed alpha
Helix 19	AC1	B	187	203	Right-handed alpha
Helix 20	AC2	B	207	211	Right-handed 310
Helix 21	AC3	B	219	234	Right-handed alpha
Helix 22	AC4	B	236	244	Right-handed alpha
Helix 23	AC5	B	253	257	Right-handed 310
Helix 24	AC6	B	260	275	Right-handed alpha
Helix 25	AC7	B	278	291	Right-handed alpha
Helix 26	AC8	B	300	307	Right-handed alpha
Helix 27	AC9	B	324	335	Right-handed alpha
Helix 28	AD1	B	348	350	Right-handed 310
Helix 29	AD2	B	351	356	Right-handed alpha
Helix 30	AD3	B	356	375	Right-handed alpha
Helix 31	AD4	C	122	126	Right-handed 310
Helix 32	AD5	C	130	145	Right-handed alpha
Helix 33	AD6	C	157	170	Right-handed alpha
Helix 34	AD7	C	187	204	Right-handed alpha
Helix 35	AD8	C	205	211	Right-handed 310
Helix 36	AD9	C	219	235	Right-handed alpha
Helix 37	AE1	C	236	244	Right-handed alpha
Helix 38	AE2	C	253	257	Right-handed 310
Helix 39	AE3	C	260	277	Right-handed alpha
Helix 40	AE4	C	278	291	Right-handed alpha
Helix 41	AE5	C	300	307	Right-handed alpha
Helix 42	AE6	C	324	335	Right-handed alpha
Helix 43	AE7	C	348	350	Right-handed 310
Helix 44	AE8	C	351	356	Right-handed alpha
Helix 45	AE9	C	356	374	Right-handed alpha
Helix 46	AF1	D	122	126	Right-handed 310
Helix 47	AF2	D	130	145	Right-handed alpha
Helix 48	AF3	D	157	170	Right-handed alpha
Helix 49	AF4	D	187	204	Right-handed alpha
Helix 50	AF5	D	205	211	Right-handed 310
Helix 51	AF6	D	219	235	Right-handed alpha
Helix 52	AF7	D	236	244	Right-handed alpha
Helix 53	AF8	D	253	257	Right-handed 310
Helix 54	AF9	D	260	275	Right-handed alpha
Helix 55	AG1	D	278	291	Right-handed alpha
Helix 56	AG2	D	300	307	Right-handed alpha
Helix 57	AG3	D	324	335	Right-handed alpha
Helix 58	AG4	D	348	350	Right-handed 310
Helix 59	AG5	D	351	356	Right-handed alpha
Helix 60	AG6	D	356	374	Right-handed alpha
Helix 61	AG7	E	122	126	Right-handed 310
Helix 62	AG8	E	130	144	Right-handed alpha
Helix 63	AG9	E	157	170	Right-handed alpha
Helix 64	AH1	E	187	204	Right-handed alpha
Helix 65	AH2	E	205	211	Right-handed 310
Helix 66	AH3	E	219	235	Right-handed alpha
Helix 67	AH4	E	236	244	Right-handed alpha
Helix 68	AH5	E	253	257	Right-handed 310
Helix 69	AH6	E	260	275	Right-handed alpha
Helix 70	AH7	E	278	291	Right-handed alpha
Helix 71	AH8	E	300	307	Right-handed alpha
Helix 72	AH9	E	324	335	Right-handed alpha
Helix 73	AI1	E	348	350	Right-handed 310
Helix 74	AI2	E	351	356	Right-handed alpha
Helix 75	AI3	E	356	371	Right-handed alpha
Helix 76	AI4	F	122	126	Right-handed 310
Helix 77	AI5	F	130	145	Right-handed alpha
Helix 78	AI6	F	157	170	Right-handed alpha
Helix 79	AI7	F	187	204	Right-handed alpha
Helix 80	AI8	F	205	211	Right-handed 310
Helix 81	AI9	F	219	235	Right-handed alpha
Helix 82	AJ1	F	236	244	Right-handed alpha
Helix 83	AJ2	F	253	257	Right-handed 310
Helix 84	AJ3	F	260	275	Right-handed alpha
Helix 85	AJ4	F	278	291	Right-handed alpha
Helix 86	AJ5	F	300	307	Right-handed alpha
Helix 87	AJ6	F	324	335	Right-handed alpha
Helix 88	AJ7	F	348	350	Right-handed 310
Helix 89	AJ8	F	351	356	Right-handed alpha
Helix 90	AJ9	F	356	374	Right-handed alpha

There are 12 sheets in PDB entry 7RYT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	26	first strand
Strand 2	A	32	44	anti-parallel
Strand 3	A	96	100	anti-parallel
Strand 4	A	53	57	parallel
Strand 5	A	150	156	parallel
Strand 6	A	174	180	parallel
Strand 7	A	312	317	parallel
Strand 8	A	342	344	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	90	91	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	26	first strand
Strand 2	B	32	43	anti-parallel
Strand 3	B	96	100	anti-parallel
Strand 4	B	53	57	parallel
Strand 5	B	150	156	parallel
Strand 6	B	174	180	parallel
Strand 7	B	312	317	parallel
Strand 8	B	342	344	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	90	91	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	26	first strand
Strand 2	C	32	43	anti-parallel
Strand 3	C	96	100	anti-parallel
Strand 4	C	53	57	parallel
Strand 5	C	150	156	parallel
Strand 6	C	174	180	parallel
Strand 7	C	312	317	parallel
Strand 8	C	341	344	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	90	91	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	26	first strand
Strand 2	D	32	43	anti-parallel
Strand 3	D	96	100	anti-parallel
Strand 4	D	53	57	parallel
Strand 5	D	150	156	parallel
Strand 6	D	174	180	parallel
Strand 7	D	312	317	parallel
Strand 8	D	342	344	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	85	first strand
Strand 2	D	90	91	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	26	first strand
Strand 2	E	32	43	anti-parallel
Strand 3	E	96	100	anti-parallel
Strand 4	E	53	57	parallel
Strand 5	E	150	156	parallel
Strand 6	E	174	180	parallel
Strand 7	E	312	317	parallel
Strand 8	E	342	344	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	85	first strand
Strand 2	E	90	91	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	26	first strand
Strand 2	F	32	43	anti-parallel
Strand 3	F	96	100	anti-parallel
Strand 4	F	53	57	parallel
Strand 5	F	150	156	parallel
Strand 6	F	174	180	parallel
Strand 7	F	312	317	parallel
Strand 8	F	342	344	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	85	first strand
Strand 2	F	90	91	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7RYT

Analysis of interatomic Contacts of Structural Units in PDB entry:
7RYT