Analysis of interatomic Contacts of Structural Units in PDB entry:
7RYZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7RYZ entry

There are 4 chains in PDB entry 7RYZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 394	LYS 1233
B	THR 394	ALA 820
C	THR 394	LYS 1233
D	THR 394	ALA 820

There are 78 helices in PDB entry 7RYZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	416	419	Right-handed 310
Helix 2	AA2	A	423	437	Right-handed alpha
Helix 3	AA3	A	461	470	Right-handed alpha
Helix 4	AA4	A	482	487	Right-handed alpha
Helix 5	AA5	A	515	519	Right-handed 310
Helix 6	AA6	A	522	547	Right-handed alpha
Helix 7	AA7	A	572	585	Right-handed alpha
Helix 8	AA8	A	595	627	Right-handed alpha
Helix 9	AA9	A	635	641	Right-handed alpha
Helix 10	AB1	A	653	661	Right-handed alpha
Helix 11	AB2	A	664	676	Right-handed alpha
Helix 12	AB3	A	685	697	Right-handed alpha
Helix 13	AB4	A	706	714	Right-handed alpha
Helix 14	AB5	A	742	757	Right-handed alpha
Helix 15	AB6	A	757	770	Right-handed alpha
Helix 16	AB7	A	775	780	Right-handed alpha
Helix 17	AB8	A	789	791	Right-handed 310
Helix 18	AB9	A	792	822	Right-handed alpha
Helix 19	AC1	A	1005	1029	Right-handed alpha
Helix 20	AC2	A	1118	1148	Right-handed alpha
Helix 21	AC3	A	1159	1194	Right-handed alpha
Helix 22	AC4	A	1210	1233	Right-handed alpha
Helix 23	AC5	B	423	437	Right-handed alpha
Helix 24	AC6	B	461	469	Right-handed alpha
Helix 25	AC7	B	482	487	Right-handed alpha
Helix 26	AC8	B	515	519	Right-handed 310
Helix 27	AC9	B	522	547	Right-handed alpha
Helix 28	AD1	B	572	585	Right-handed alpha
Helix 29	AD2	B	595	626	Right-handed alpha
Helix 30	AD3	B	635	641	Right-handed alpha
Helix 31	AD4	B	653	661	Right-handed alpha
Helix 32	AD5	B	664	677	Right-handed alpha
Helix 33	AD6	B	685	695	Right-handed alpha
Helix 34	AD7	B	706	714	Right-handed alpha
Helix 35	AD8	B	740	742	Right-handed 310
Helix 36	AD9	B	743	756	Right-handed alpha
Helix 37	AE1	B	757	770	Right-handed alpha
Helix 38	AE2	B	775	780	Right-handed alpha
Helix 39	AE3	B	792	820	Right-handed alpha
Helix 40	AE4	C	416	419	Right-handed 310
Helix 41	AE5	C	423	437	Right-handed alpha
Helix 42	AE6	C	461	470	Right-handed alpha
Helix 43	AE7	C	482	487	Right-handed alpha
Helix 44	AE8	C	515	519	Right-handed 310
Helix 45	AE9	C	522	547	Right-handed alpha
Helix 46	AF1	C	572	585	Right-handed alpha
Helix 47	AF2	C	595	627	Right-handed alpha
Helix 48	AF3	C	635	641	Right-handed alpha
Helix 49	AF4	C	653	661	Right-handed alpha
Helix 50	AF5	C	664	676	Right-handed alpha
Helix 51	AF6	C	685	697	Right-handed alpha
Helix 52	AF7	C	706	714	Right-handed alpha
Helix 53	AF8	C	742	757	Right-handed alpha
Helix 54	AF9	C	757	770	Right-handed alpha
Helix 55	AG1	C	775	780	Right-handed alpha
Helix 56	AG2	C	789	791	Right-handed 310
Helix 57	AG3	C	792	822	Right-handed alpha
Helix 58	AG4	C	1005	1029	Right-handed alpha
Helix 59	AG5	C	1118	1148	Right-handed alpha
Helix 60	AG6	C	1159	1194	Right-handed alpha
Helix 61	AG7	C	1210	1233	Right-handed alpha
Helix 62	AG8	D	423	437	Right-handed alpha
Helix 63	AG9	D	461	469	Right-handed alpha
Helix 64	AH1	D	482	487	Right-handed alpha
Helix 65	AH2	D	515	519	Right-handed 310
Helix 66	AH3	D	522	547	Right-handed alpha
Helix 67	AH4	D	572	585	Right-handed alpha
Helix 68	AH5	D	595	626	Right-handed alpha
Helix 69	AH6	D	635	641	Right-handed alpha
Helix 70	AH7	D	653	661	Right-handed alpha
Helix 71	AH8	D	664	677	Right-handed alpha
Helix 72	AH9	D	685	695	Right-handed alpha
Helix 73	AI1	D	706	714	Right-handed alpha
Helix 74	AI2	D	740	742	Right-handed 310
Helix 75	AI3	D	743	756	Right-handed alpha
Helix 76	AI4	D	757	770	Right-handed alpha
Helix 77	AI5	D	775	780	Right-handed alpha
Helix 78	AI6	D	792	820	Right-handed alpha

There are 22 sheets in PDB entry 7RYZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	444	first strand
Strand 2	A	395	399	parallel
Strand 3	A	474	475	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	421	422	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	491	first strand
Strand 2	A	735	736	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	498	first strand
Strand 2	A	730	732	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	646	648	first strand
Strand 2	A	700	705	parallel
Strand 3	A	500	505	anti-parallel
Strand 4	A	720	723	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1033	1039	first strand
Strand 2	A	1087	1093	anti-parallel
Strand 3	A	1097	1100	anti-parallel
Strand 4	A	1109	1112	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	444	first strand
Strand 2	B	395	399	parallel
Strand 3	B	474	475	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	421	422	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	491	first strand
Strand 2	B	735	736	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	648	first strand
Strand 2	B	700	705	parallel
Strand 3	B	496	505	anti-parallel
Strand 4	B	720	723	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	648	first strand
Strand 2	B	700	705	parallel
Strand 3	B	496	505	anti-parallel
Strand 4	B	729	732	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	444	first strand
Strand 2	C	395	399	parallel
Strand 3	C	474	475	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	408	first strand
Strand 2	C	421	422	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	490	491	first strand
Strand 2	C	735	736	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	498	first strand
Strand 2	C	730	732	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	646	648	first strand
Strand 2	C	700	705	parallel
Strand 3	C	500	505	anti-parallel
Strand 4	C	720	723	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1033	1039	first strand
Strand 2	C	1087	1093	anti-parallel
Strand 3	C	1097	1100	anti-parallel
Strand 4	C	1109	1112	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	440	444	first strand
Strand 2	D	395	399	parallel
Strand 3	D	474	475	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	421	422	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	490	491	first strand
Strand 2	D	735	736	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	648	first strand
Strand 2	D	700	705	parallel
Strand 3	D	496	505	anti-parallel
Strand 4	D	720	723	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	648	first strand
Strand 2	D	700	705	parallel
Strand 3	D	496	505	anti-parallel
Strand 4	D	729	732	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7RYZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7RYZ