Analysis of interatomic Contacts of Structural Units in PDB entry:
7S07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7S07 entry

There are 6 chains in PDB entry 7S07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 18TYR 674
B
 PRO 27PHE 124
C
 LYS 47PRO 79
X
 GLU 1SER 212
Y
 SER 2THR 207
H
 GLU 1THR 87
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 7S07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 47Right-handed alpha
Helix 2
AA2
A
51 57Right-handed alpha
Helix 3
AA3
A
64 73Right-handed alpha
Helix 4
AA4
A
123 131Right-handed alpha
Helix 5
AA5
A
202 204Right-handed 310
Helix 6
AA6
A
231 242Right-handed alpha
Helix 7
AA7
A
245 256Right-handed alpha
Helix 8
AA8
A
257 275Right-handed alpha
Helix 9
AA9
A
284 307Right-handed alpha
Helix 10
AB1
A
315 336Right-handed alpha
Helix 11
AB2
A
345 355Right-handed alpha
Helix 12
AB3
A
363 367Right-handed 310
Helix 13
AB4
A
368 383Right-handed alpha
Helix 14
AB5
A
391 406Right-handed alpha
Helix 15
AB6
A
414 433Right-handed alpha
Helix 16
AB7
A
439 454Right-handed alpha
Helix 17
AB8
A
457 466Right-handed alpha
Helix 18
AB9
A
471 475Right-handed 310
Helix 19
AC1
A
487 492Right-handed alpha
Helix 20
AC2
A
493 495Right-handed 310
Helix 21
AC3
A
502 514Right-handed alpha
Helix 22
AC4
A
636 645Right-handed alpha
Helix 23
AC5
B
82 95Right-handed alpha
Helix 24
AC6
B
101 117Right-handed alpha
Helix 25
AC7
X
52 55Right-handed 310
Helix 26
AC8
H
28 32Right-handed 310
Helix 27
AC9
H
83 87Right-handed 310
Helix 28
AD1
H
99 100Right-handed 310
Helix 29
AD2
L
79 83Right-handed 310
Helix 30
AD3
L
121 126Right-handed alpha
Helix 31
AD4
L
182 187Right-handed alpha
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There are 27 sheets in PDB entry 7S07. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
23 28anti-parallel
Strand 3
B
46 51parallel
Strand 4
B
61 65anti-parallel
Strand 5
B
78 81anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
217 220parallel
Strand 3
A
224 229anti-parallel
Strand 4
A
190 200anti-parallel
Strand 5
A
177 186anti-parallel
Strand 6
A
167 173anti-parallel
Strand 7
A
156 161anti-parallel
Strand 8
A
339 341anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
119 122parallel
Strand 3
A
312 314anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
152 154anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 546first strand
Strand 2
A
550 555anti-parallel
Strand 3
A
577 583anti-parallel
Strand 4
A
566 568anti-parallel
Strand 5
A
597 598parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
601 602first strand
Strand 2
A
667 670parallel
Strand 3
A
656 661anti-parallel
Strand 4
A
618 623anti-parallel
Strand 5
A
632 633anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
4 6first strand
Strand 2
X
16 24anti-parallel
Strand 3
X
79 82anti-parallel
Strand 4
X
67 70anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
46 47first strand
Strand 2
X
37 39anti-parallel
Strand 3
X
88 91anti-parallel
Strand 4
X
105 106anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
50 51first strand
Strand 2
X
57 58anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
94 95first strand
Strand 2
X
100 100anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
117 120first strand
Strand 2
X
137 142anti-parallel
Strand 3
X
173 178anti-parallel
Strand 4
X
161 163anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
149 151first strand
Strand 2
X
192 197anti-parallel
Strand 3
X
202 207anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
12 14first strand
Strand 2
Y
102 104parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
45 49first strand
Strand 2
Y
33 38anti-parallel
Strand 3
Y
85 90anti-parallel
Strand 4
Y
95 95anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
62 63first strand
Strand 2
Y
74 75anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
112 116first strand
Strand 2
Y
131 137anti-parallel
Strand 3
Y
170 175anti-parallel
Strand 4
Y
158 159anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
143 145first strand
Strand 2
Y
190 194anti-parallel
Strand 3
Y
201 203anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 7first strand
Strand 2
H
17 22anti-parallel
Strand 3
H
77 83anti-parallel
Strand 4
H
68 72anti-parallel
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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
104 108parallel
Strand 3
H
88 97anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
57 59anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
104 108parallel
Strand 3
H
88 97anti-parallel
Strand 4
H
100 100anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
117 121first strand
Strand 2
H
136 140anti-parallel
Strand 3
H
176 179anti-parallel
Strand 4
H
160 162anti-parallel
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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
148 151first strand
Strand 2
H
192 197anti-parallel
Strand 3
H
202 207anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 63anti-parallel
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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 12first strand
Strand 2
L
102 105parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
44 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 12first strand
Strand 2
L
102 105parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
97 98anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
116 118first strand
Strand 2
L
131 139anti-parallel
Strand 3
L
173 180anti-parallel
Strand 4
L
159 160anti-parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
145 148first strand
Strand 2
L
194 197anti-parallel
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