Analysis of interatomic Contacts of Structural Units in PDB entry:
7S0Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7S0Q entry

There are 3 chains in PDB entry 7S0Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	ASN 577
B	CYS 308	LYS 718
D	GLU 3	PRO 63

There are 23 helices in PDB entry 7S0Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	20	Right-handed 310
Helix 2	AA2	A	37	42	Right-handed 310
Helix 3	AA3	A	65	69	Right-handed 310
Helix 4	AA4	A	126	131	Right-handed alpha
Helix 5	AA5	A	133	137	Right-handed 310
Helix 6	AA6	A	144	148	Right-handed 310
Helix 7	AA7	A	195	199	Right-handed 310
Helix 8	AA8	A	250	255	Right-handed alpha
Helix 9	AA9	A	314	319	Right-handed alpha
Helix 10	AB1	A	339	348	Right-handed alpha
Helix 11	AB2	A	368	372	Right-handed 310
Helix 12	AB3	A	425	437	Right-handed alpha
Helix 13	AB4	B	323	330	Right-handed alpha
Helix 14	AB5	B	349	359	Right-handed alpha
Helix 15	AB6	B	435	446	Right-handed alpha
Helix 16	AB7	B	448	452	Right-handed 310
Helix 17	AB8	B	496	498	Right-handed 310
Helix 18	AB9	B	542	546	Right-handed 310
Helix 19	AC1	B	689	714	Right-handed alpha
Helix 20	AC2	D	6	19	Right-handed alpha
Helix 21	AC3	D	20	22	Right-handed 310
Helix 22	AC4	D	43	48	Right-handed alpha
Helix 23	AC5	D	53	59	Right-handed alpha

There are 19 sheets in PDB entry 7S0Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	A	24	25	parallel
Strand 3	A	50	51	parallel
Strand 4	A	75	76	parallel
Strand 5	A	105	106	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	10	first strand
Strand 2	A	28	32	parallel
Strand 3	A	55	58	parallel
Strand 4	A	85	90	parallel
Strand 5	A	110	114	parallel
Strand 6	A	138	141	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	167	first strand
Strand 2	A	170	173	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	209	first strand
Strand 2	A	218	221	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	241	first strand
Strand 2	A	245	247	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	269	first strand
Strand 2	A	272	274	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	282	first strand
Strand 2	A	292	293	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	A	325	326	parallel
Strand 3	A	353	354	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	311	first strand
Strand 2	A	329	332	parallel
Strand 3	A	358	361	parallel
Strand 4	A	388	393	parallel
Strand 5	A	415	418	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	378	first strand
Strand 2	A	410	411	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	470	first strand
Strand 2	A	475	479	anti-parallel
Strand 3	A	535	538	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	525	first strand
Strand 2	A	492	499	anti-parallel
Strand 3	A	546	554	anti-parallel
Strand 4	A	567	568	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	525	first strand
Strand 2	A	492	499	anti-parallel
Strand 3	A	546	554	anti-parallel
Strand 4	A	572	575	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	321	first strand
Strand 2	B	335	342	parallel
Strand 3	B	368	371	parallel
Strand 4	B	400	403	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	364	first strand
Strand 2	B	387	388	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	471	472	first strand
Strand 2	B	581	582	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	480	first strand
Strand 2	B	484	489	anti-parallel
Strand 3	B	550	554	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	530	534	first strand
Strand 2	B	500	509	anti-parallel
Strand 3	B	568	570	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	530	534	first strand
Strand 2	B	500	509	anti-parallel
Strand 3	B	561	565	anti-parallel
Strand 4	B	586	589	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7S0Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
7S0Q