Analysis of interatomic Contacts of Structural Units in PDB entry:
7S2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7S2J entry

There are 4 chains in PDB entry 7S2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3ARG 269
B
 LYS 3ARG 269
C
 MET 1ILE 270
D
 ASN 2ILE 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 7S2J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 40Right-handed alpha
Helix 2
AA2
A
60 79Right-handed alpha
Helix 3
AA3
A
88 98Right-handed alpha
Helix 4
AA4
A
111 113Right-handed 310
Helix 5
AA5
A
114 120Right-handed alpha
Helix 6
AA6
A
145 164Right-handed alpha
Helix 7
AA7
A
167 169Right-handed 310
Helix 8
AA8
A
177 181Right-handed 310
Helix 9
AA9
A
184 195Right-handed alpha
Helix 10
AB1
A
195 203Right-handed alpha
Helix 11
AB2
A
213 221Right-handed alpha
Helix 12
AB3
A
223 226Right-handed 310
Helix 13
AB4
A
227 241Right-handed alpha
Helix 14
AB5
A
250 268Right-handed alpha
Helix 15
AB6
B
26 40Right-handed alpha
Helix 16
AB7
B
60 79Right-handed alpha
Helix 17
AB8
B
88 98Right-handed alpha
Helix 18
AB9
B
111 113Right-handed 310
Helix 19
AC1
B
114 120Right-handed alpha
Helix 20
AC2
B
145 164Right-handed alpha
Helix 21
AC3
B
167 169Right-handed 310
Helix 22
AC4
B
177 181Right-handed 310
Helix 23
AC5
B
184 195Right-handed alpha
Helix 24
AC6
B
195 203Right-handed alpha
Helix 25
AC7
B
213 221Right-handed alpha
Helix 26
AC8
B
227 241Right-handed alpha
Helix 27
AC9
B
250 269Right-handed alpha
Helix 28
AD1
C
26 40Right-handed alpha
Helix 29
AD2
C
60 79Right-handed alpha
Helix 30
AD3
C
88 98Right-handed alpha
Helix 31
AD4
C
111 113Right-handed 310
Helix 32
AD5
C
114 120Right-handed alpha
Helix 33
AD6
C
145 164Right-handed alpha
Helix 34
AD7
C
167 169Right-handed 310
Helix 35
AD8
C
177 181Right-handed 310
Helix 36
AD9
C
184 195Right-handed alpha
Helix 37
AE1
C
195 203Right-handed alpha
Helix 38
AE2
C
213 220Right-handed 310
Helix 39
AE3
C
227 241Right-handed alpha
Helix 40
AE4
C
250 270Right-handed alpha
Helix 41
AE5
D
26 40Right-handed alpha
Helix 42
AE6
D
60 79Right-handed alpha
Helix 43
AE7
D
88 98Right-handed alpha
Helix 44
AE8
D
111 113Right-handed 310
Helix 45
AE9
D
114 121Right-handed alpha
Helix 46
AF1
D
130 134Right-handed 310
Helix 47
AF2
D
145 164Right-handed alpha
Helix 48
AF3
D
167 169Right-handed 310
Helix 49
AF4
D
177 181Right-handed 310
Helix 50
AF5
D
184 195Right-handed alpha
Helix 51
AF6
D
195 203Right-handed alpha
Helix 52
AF7
D
213 221Right-handed alpha
Helix 53
AF8
D
227 241Right-handed alpha
Helix 54
AF9
D
250 270Right-handed alpha
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There are 4 sheets in PDB entry 7S2J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 174first strand
Strand 2
A
124 128parallel
Strand 3
A
102 105parallel
Strand 4
A
82 85parallel
Strand 5
A
44 48parallel
Strand 6
A
6 12parallel
Strand 7
A
245 248parallel
Strand 8
A
207 208parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 174first strand
Strand 2
B
124 128parallel
Strand 3
B
102 105parallel
Strand 4
B
82 85parallel
Strand 5
B
44 48parallel
Strand 6
B
6 12parallel
Strand 7
B
245 248parallel
Strand 8
B
207 208parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
171 174first strand
Strand 2
C
124 128parallel
Strand 3
C
102 105parallel
Strand 4
C
82 85parallel
Strand 5
C
44 48parallel
Strand 6
C
6 12parallel
Strand 7
C
245 248parallel
Strand 8
C
207 208parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
171 174first strand
Strand 2
D
124 128parallel
Strand 3
D
102 105parallel
Strand 4
D
82 85parallel
Strand 5
D
44 48parallel
Strand 6
D
6 12parallel
Strand 7
D
245 248parallel
Strand 8
D
207 208parallel
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