Analysis of interatomic Contacts of Structural Units in PDB entry:
7S3M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7S3M entry

There are 3 chains in PDB entry 7S3M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1230SER 1243
H
 GLU 3LYS 225
L
 ASP 3GLU 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 7S3M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1230 1241Right-handed alpha
Helix 2
AA2
H
30 34Right-handed 310
Helix 3
AA3
H
64 67Right-handed 310
Helix 4
AA4
H
76 78Right-handed 310
Helix 5
AA5
H
89 93Right-handed 310
Helix 6
AA6
H
104 108Right-handed 310
Helix 7
AA7
H
198 200Right-handed 310
Helix 8
AA8
L
87 91Right-handed 310
Helix 9
AA9
L
128 133Right-handed alpha
Helix 10
AB1
L
190 195Right-handed alpha
Back to top of page

There are 11 sheets in PDB entry 7S3M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
5 7first strand
Strand 2
H
20 27anti-parallel
Strand 3
H
80 85anti-parallel
Strand 4
H
70 75anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
12 14first strand
Strand 2
H
118 122parallel
Strand 3
H
94 101anti-parallel
Strand 4
H
36 41anti-parallel
Strand 5
H
47 53anti-parallel
Strand 6
H
60 62anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
12 14first strand
Strand 2
H
118 122parallel
Strand 3
H
94 101anti-parallel
Strand 4
H
111 114anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
131 135first strand
Strand 2
H
146 156anti-parallel
Strand 3
H
187 196anti-parallel
Strand 4
H
174 176anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
131 135first strand
Strand 2
H
146 156anti-parallel
Strand 3
H
187 196anti-parallel
Strand 4
H
180 181anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
161 165first strand
Strand 2
H
206 211anti-parallel
Strand 3
H
216 221anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
6 9first strand
Strand 2
L
21 27anti-parallel
Strand 3
L
78 83anti-parallel
Strand 4
L
70 75anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
12 16first strand
Strand 2
L
109 114parallel
Strand 3
L
92 98anti-parallel
Strand 4
L
41 46anti-parallel
Strand 5
L
52 57anti-parallel
Strand 6
L
61 62anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
12 16first strand
Strand 2
L
109 114parallel
Strand 3
L
92 98anti-parallel
Strand 4
L
104 105anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
121 125first strand
Strand 2
L
136 146anti-parallel
Strand 3
L
180 189anti-parallel
Strand 4
L
166 170anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
160 161first strand
Strand 2
L
152 157anti-parallel
Strand 3
L
198 204anti-parallel
Strand 4
L
212 217anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il