Analysis of interatomic Contacts of Structural Units in PDB entry:
7S4V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7S4V entry

There are 4 chains in PDB entry 7S4V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3GLY 1366
B
 G 1 U 98
C
 C 1 C 33
D
 G 1 G 40
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 7S4V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 94Right-handed alpha
Helix 2
AA2
A
96 104Right-handed alpha
Helix 3
AA3
A
122 132Right-handed alpha
Helix 4
AA4
A
134 145Right-handed alpha
Helix 5
AA5
A
150 164Right-handed alpha
Helix 6
AA6
A
175 180Right-handed alpha
Helix 7
AA7
A
181 183Right-handed 310
Helix 8
AA8
A
184 196Right-handed alpha
Helix 9
AA9
A
207 214Right-handed alpha
Helix 10
AB1
A
217 229Right-handed alpha
Helix 11
AB2
A
233 238Right-handed alpha
Helix 12
AB3
A
240 246Right-handed alpha
Helix 13
AB4
A
270 275Right-handed alpha
Helix 14
AB5
A
275 280Right-handed alpha
Helix 15
AB6
A
289 304Right-handed alpha
Helix 16
AB7
A
315 343Right-handed alpha
Helix 17
AB8
A
346 352Right-handed alpha
Helix 18
AB9
A
359 364Right-handed alpha
Helix 19
AC1
A
368 382Right-handed alpha
Helix 20
AC2
A
386 394Right-handed alpha
Helix 21
AC3
A
404 410Right-handed 310
Helix 22
AC4
A
411 427Right-handed alpha
Helix 23
AC5
A
430 436Right-handed alpha
Helix 24
AC6
A
436 445Right-handed alpha
Helix 25
AC7
A
477 481Right-handed 310
Helix 26
AC8
A
484 494Right-handed alpha
Helix 27
AC9
A
512 525Right-handed alpha
Helix 28
AD1
A
541 553Right-handed alpha
Helix 29
AD2
A
560 567Right-handed alpha
Helix 30
AD3
A
568 572Right-handed 310
Helix 31
AD4
A
573 576Right-handed 310
Helix 32
AD5
A
591 602Right-handed alpha
Helix 33
AD6
A
604 609Right-handed alpha
Helix 34
AD7
A
612 626Right-handed alpha
Helix 35
AD8
A
628 637Right-handed alpha
Helix 36
AD9
A
638 643Right-handed 310
Helix 37
AE1
A
644 652Right-handed alpha
Helix 38
AE2
A
663 668Right-handed alpha
Helix 39
AE3
A
678 686Right-handed alpha
Helix 40
AE4
A
692 698Right-handed alpha
Helix 41
AE5
A
705 712Right-handed alpha
Helix 42
AE6
A
720 725Right-handed alpha
Helix 43
AE7
A
730 751Right-handed alpha
Helix 44
AE8
A
926 940Right-handed alpha
Helix 45
AE9
A
960 970Right-handed alpha
Helix 46
AF1
A
981 998Right-handed alpha
Helix 47
AF2
A
1079 1088Right-handed alpha
Helix 48
AF3
A
1127 1132Right-handed alpha
Helix 49
AF4
A
1170 1177Right-handed alpha
Helix 50
AF5
A
1177 1184Right-handed alpha
Helix 51
AF6
A
1229 1240Right-handed alpha
Helix 52
AF7
A
1248 1251Right-handed 310
Helix 53
AF8
A
1252 1262Right-handed alpha
Helix 54
AF9
A
1264 1280Right-handed alpha
Helix 55
AG1
A
1283 1296Right-handed alpha
Helix 56
AG2
A
1301 1310Right-handed alpha
Helix 57
AG3
A
1311 1316Right-handed 310
Helix 58
AG4
A
1339 1343Right-handed 310
Helix 59
AG5
A
1363 1365Right-handed 310
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There are 7 sheets in PDB entry 7S4V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
956 957first strand
Strand 2
A
759 761parallel
Strand 3
A
6 11parallel
Strand 4
A
15 21anti-parallel
Strand 5
A
48 52anti-parallel
Strand 6
A
1093 1096parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
43 46anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
1357 1361parallel
Strand 3
A
1346 1350anti-parallel
Strand 4
A
1203 1206anti-parallel
Strand 5
A
1210 1216anti-parallel
Strand 6
A
1219 1222anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
530 531first strand
Strand 2
A
578 579anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1162first strand
Strand 2
A
1139 1151anti-parallel
Strand 3
A
1165 1167anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1162first strand
Strand 2
A
1139 1151anti-parallel
Strand 3
A
1196 1198anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1324 1325first strand
Strand 2
A
1330 1331anti-parallel
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