Analysis of interatomic Contacts of Structural Units in PDB entry:
7S5E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7S5E entry

There are 7 chains in PDB entry 7S5E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 12	THR 214
B	VAL 11	THR 214
C	ALA 12	ASP 216
D	ALA 10	ASP 216
E	ALA 12	THR 214
F	VAL 11	THR 214
G	ALA 12	SER 135

There are 80 helices in PDB entry 7S5E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	38	Right-handed alpha
Helix 2	AA2	A	66	76	Right-handed alpha
Helix 3	AA3	A	97	103	Right-handed alpha
Helix 4	AA4	A	112	123	Right-handed alpha
Helix 5	AA5	A	135	147	Right-handed alpha
Helix 6	AA6	A	150	166	Right-handed alpha
Helix 7	AA7	A	167	171	Right-handed 310
Helix 8	AA8	A	179	196	Right-handed alpha
Helix 9	AA9	A	197	205	Right-handed alpha
Helix 10	AB1	A	205	214	Right-handed alpha
Helix 11	AB2	B	26	38	Right-handed alpha
Helix 12	AB3	B	66	76	Right-handed alpha
Helix 13	AB4	B	97	103	Right-handed alpha
Helix 14	AB5	B	112	123	Right-handed alpha
Helix 15	AB6	B	135	142	Right-handed alpha
Helix 16	AB7	B	150	166	Right-handed alpha
Helix 17	AB8	B	167	171	Right-handed 310
Helix 18	AB9	B	179	196	Right-handed alpha
Helix 19	AC1	B	197	205	Right-handed alpha
Helix 20	AC2	B	205	214	Right-handed alpha
Helix 21	AC3	C	26	38	Right-handed alpha
Helix 22	AC4	C	66	76	Right-handed alpha
Helix 23	AC5	C	97	103	Right-handed alpha
Helix 24	AC6	C	112	123	Right-handed alpha
Helix 25	AC7	C	135	142	Right-handed alpha
Helix 26	AC8	C	151	166	Right-handed alpha
Helix 27	AC9	C	167	171	Right-handed 310
Helix 28	AD1	C	179	196	Right-handed alpha
Helix 29	AD2	C	197	205	Right-handed alpha
Helix 30	AD3	C	205	214	Right-handed alpha
Helix 31	AD4	D	26	38	Right-handed alpha
Helix 32	AD5	D	66	77	Right-handed alpha
Helix 33	AD6	D	97	103	Right-handed alpha
Helix 34	AD7	D	112	123	Right-handed alpha
Helix 35	AD8	D	135	147	Right-handed alpha
Helix 36	AD9	D	150	166	Right-handed alpha
Helix 37	AE1	D	167	171	Right-handed 310
Helix 38	AE2	D	179	196	Right-handed alpha
Helix 39	AE3	D	197	205	Right-handed alpha
Helix 40	AE4	D	205	214	Right-handed alpha
Helix 41	AE5	E	26	38	Right-handed alpha
Helix 42	AE6	E	66	76	Right-handed alpha
Helix 43	AE7	E	97	103	Right-handed alpha
Helix 44	AE8	E	112	123	Right-handed alpha
Helix 45	AE9	E	135	147	Right-handed alpha
Helix 46	AF1	E	150	166	Right-handed alpha
Helix 47	AF2	E	167	171	Right-handed 310
Helix 48	AF3	E	179	196	Right-handed alpha
Helix 49	AF4	E	197	205	Right-handed alpha
Helix 50	AF5	E	205	214	Right-handed alpha
Helix 51	AF6	F	26	38	Right-handed alpha
Helix 52	AF7	F	66	76	Right-handed alpha
Helix 53	AF8	F	97	103	Right-handed alpha
Helix 54	AF9	F	112	123	Right-handed alpha
Helix 55	AG1	F	135	142	Right-handed alpha
Helix 56	AG2	F	150	166	Right-handed alpha
Helix 57	AG3	F	167	171	Right-handed 310
Helix 58	AG4	F	179	196	Right-handed alpha
Helix 59	AG5	F	197	205	Right-handed alpha
Helix 60	AG6	F	205	214	Right-handed alpha
Helix 61	AG7	G	26	38	Right-handed alpha
Helix 62	AG8	G	66	76	Right-handed alpha
Helix 63	AG9	G	97	103	Right-handed alpha
Helix 64	AH1	G	112	123	Right-handed alpha
Helix 65	AH2	G	135	142	Right-handed alpha
Helix 66	AH3	G	151	166	Right-handed alpha
Helix 67	AH4	G	167	171	Right-handed 310
Helix 68	AH5	G	179	196	Right-handed alpha
Helix 69	AH6	G	197	205	Right-handed alpha
Helix 70	AH7	G	205	214	Right-handed alpha
Helix 71	AH8	H	26	38	Right-handed alpha
Helix 72	AH9	H	66	76	Right-handed alpha
Helix 73	AI1	H	97	103	Right-handed alpha
Helix 74	AI2	H	112	123	Right-handed alpha
Helix 75	AI3	H	135	147	Right-handed alpha
Helix 76	AI4	H	150	166	Right-handed alpha
Helix 77	AI5	H	167	171	Right-handed 310
Helix 78	AI6	H	179	196	Right-handed alpha
Helix 79	AI7	H	197	205	Right-handed alpha
Helix 80	AI8	H	205	214	Right-handed alpha

There are 16 sheets in PDB entry 7S5E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	A	106	109	parallel
Strand 3	A	16	20	parallel
Strand 4	A	127	132	parallel
Strand 5	A	173	176	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	64	first strand
Strand 2	A	47	48	parallel
Strand 3	A	88	93	anti-parallel
Strand 4	A	79	85	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	43	first strand
Strand 2	B	106	109	parallel
Strand 3	B	16	20	parallel
Strand 4	B	127	132	parallel
Strand 5	B	173	176	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	64	first strand
Strand 2	B	47	48	parallel
Strand 3	B	88	93	anti-parallel
Strand 4	B	79	85	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	43	first strand
Strand 2	C	106	109	parallel
Strand 3	C	16	20	parallel
Strand 4	C	127	132	parallel
Strand 5	C	173	176	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	64	first strand
Strand 2	C	46	48	parallel
Strand 3	C	88	93	anti-parallel
Strand 4	C	79	85	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	43	first strand
Strand 2	D	106	109	parallel
Strand 3	D	16	20	parallel
Strand 4	D	127	132	parallel
Strand 5	D	173	176	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	64	first strand
Strand 2	D	47	48	parallel
Strand 3	D	88	93	anti-parallel
Strand 4	D	79	85	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	43	first strand
Strand 2	E	106	109	parallel
Strand 3	E	16	20	parallel
Strand 4	E	127	132	parallel
Strand 5	E	173	176	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	64	first strand
Strand 2	E	47	48	parallel
Strand 3	E	88	93	anti-parallel
Strand 4	E	79	85	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	43	first strand
Strand 2	F	106	109	parallel
Strand 3	F	16	20	parallel
Strand 4	F	127	132	parallel
Strand 5	F	173	176	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	64	first strand
Strand 2	F	47	48	parallel
Strand 3	F	88	93	anti-parallel
Strand 4	F	79	85	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	41	43	first strand
Strand 2	G	106	109	parallel
Strand 3	G	16	20	parallel
Strand 4	G	127	132	parallel
Strand 5	G	173	176	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	62	64	first strand
Strand 2	G	46	48	parallel
Strand 3	G	88	93	anti-parallel
Strand 4	G	79	85	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	41	43	first strand
Strand 2	H	106	109	parallel
Strand 3	H	16	20	parallel
Strand 4	H	127	132	parallel
Strand 5	H	173	176	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	63	64	first strand
Strand 2	H	47	48	parallel
Strand 3	H	88	93	anti-parallel
Strand 4	H	79	85	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7S5E

Analysis of interatomic Contacts of Structural Units in PDB entry:
7S5E