Analysis of interatomic Contacts of Structural Units in PDB entry:
7S5L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7S5L entry

There is 1 chain in PDB entry 7S5L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2TYR 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 7S5L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 20Right-handed alpha
Helix 2
AA2
A
25 30Right-handed alpha
Helix 3
AA3
A
30 42Right-handed alpha
Helix 4
AA4
A
45 57Right-handed alpha
Helix 5
AA5
A
57 66Right-handed alpha
Helix 6
AA6
A
72 97Right-handed alpha
Helix 7
AA7
A
100 120Right-handed alpha
Helix 8
AA8
A
127 135Right-handed alpha
Helix 9
AA9
A
141 163Right-handed alpha
Helix 10
AB1
A
164 166Right-handed 310
Helix 11
AB2
A
168 195Right-handed alpha
Helix 12
AB3
A
202 210Right-handed alpha
Helix 13
AB4
A
214 226Right-handed alpha
Helix 14
AB5
A
236 259Right-handed alpha
Helix 15
AB6
A
259 264Right-handed alpha
Helix 16
AB7
A
270 278Right-handed alpha
Helix 17
AB8
A
283 313Right-handed alpha
Helix 18
AB9
A
316 336Right-handed alpha
Helix 19
AC1
A
338 343Right-handed alpha
Helix 20
AC2
A
354 356Right-handed 310
Helix 21
AC3
A
357 364Right-handed alpha
Helix 22
AC4
A
366 378Right-handed alpha
Helix 23
AC5
A
379 381Right-handed 310
Back to top of page

There is 1 sheet (AA1) in PDB entry 7S5L.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
349 353parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il