Analysis of interatomic Contacts of Structural Units in PDB entry:
7S5Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7S5Y entry

There are 5 chains in PDB entry 7S5Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 32	ASP 352
B	ARG 32	ASP 352
C	ARG 32	ASP 352
D	ARG 32	ASP 352
E	PRO 3	LYS 1582

There are 83 helices in PDB entry 7S5Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	65	Right-handed alpha
Helix 2	AA2	A	67	97	Right-handed alpha
Helix 3	AA3	A	116	129	Right-handed alpha
Helix 4	AA4	A	143	172	Right-handed alpha
Helix 5	AA5	A	173	179	Right-handed 310
Helix 6	AA6	A	271	275	Right-handed 310
Helix 7	AA7	B	59	65	Right-handed alpha
Helix 8	AA8	B	67	97	Right-handed alpha
Helix 9	AA9	B	116	129	Right-handed alpha
Helix 10	AB1	B	143	172	Right-handed alpha
Helix 11	AB2	B	173	179	Right-handed 310
Helix 12	AB3	B	271	275	Right-handed 310
Helix 13	AB4	C	59	65	Right-handed alpha
Helix 14	AB5	C	67	97	Right-handed alpha
Helix 15	AB6	C	116	129	Right-handed alpha
Helix 16	AB7	C	143	172	Right-handed alpha
Helix 17	AB8	C	173	179	Right-handed 310
Helix 18	AB9	C	271	275	Right-handed 310
Helix 19	AC1	D	59	65	Right-handed alpha
Helix 20	AC2	D	67	97	Right-handed alpha
Helix 21	AC3	D	116	129	Right-handed alpha
Helix 22	AC4	D	143	172	Right-handed alpha
Helix 23	AC5	D	173	179	Right-handed 310
Helix 24	AC6	D	271	275	Right-handed 310
Helix 25	AC7	E	21	24	Right-handed 310
Helix 26	AC8	E	25	33	Right-handed alpha
Helix 27	AC9	E	34	51	Right-handed alpha
Helix 28	AD1	E	74	94	Right-handed alpha
Helix 29	AD2	E	108	130	Right-handed alpha
Helix 30	AD3	E	133	137	Right-handed 310
Helix 31	AD4	E	138	161	Right-handed alpha
Helix 32	AD5	E	167	194	Right-handed alpha
Helix 33	AD6	E	225	231	Right-handed alpha
Helix 34	AD7	E	259	274	Right-handed alpha
Helix 35	AD8	E	285	313	Right-handed alpha
Helix 36	AD9	E	315	330	Right-handed alpha
Helix 37	AE1	E	348	355	Right-handed alpha
Helix 38	AE2	E	355	401	Right-handed alpha
Helix 39	AE3	E	405	410	Right-handed alpha
Helix 40	AE4	E	414	424	Right-handed alpha
Helix 41	AE5	E	426	435	Right-handed alpha
Helix 42	AE6	E	435	458	Right-handed alpha
Helix 43	AE7	E	459	461	Right-handed 310
Helix 44	AE8	E	465	506	Right-handed alpha
Helix 45	AE9	E	506	512	Right-handed alpha
Helix 46	AF1	E	515	565	Right-handed alpha
Helix 47	AF2	E	574	589	Right-handed alpha
Helix 48	AF3	E	590	600	Right-handed alpha
Helix 49	AF4	E	601	616	Right-handed alpha
Helix 50	AF5	E	719	728	Right-handed alpha
Helix 51	AF6	E	783	790	Right-handed alpha
Helix 52	AF7	E	795	806	Right-handed alpha
Helix 53	AF8	E	808	814	Right-handed alpha
Helix 54	AF9	E	817	821	Right-handed 310
Helix 55	AG1	E	832	842	Right-handed alpha
Helix 56	AG2	E	861	871	Right-handed alpha
Helix 57	AG3	E	890	894	Right-handed 310
Helix 58	AG4	E	913	920	Right-handed alpha
Helix 59	AG5	E	923	932	Right-handed alpha
Helix 60	AG6	E	999	1009	Right-handed alpha
Helix 61	AG7	E	1009	1039	Right-handed alpha
Helix 62	AG8	E	1062	1097	Right-handed alpha
Helix 63	AG9	E	1100	1106	Right-handed alpha
Helix 64	AH1	E	1109	1116	Right-handed alpha
Helix 65	AH2	E	1117	1134	Right-handed alpha
Helix 66	AH3	E	1135	1161	Right-handed alpha
Helix 67	AH4	E	1162	1169	Right-handed 310
Helix 68	AH5	E	1170	1196	Right-handed alpha
Helix 69	AH6	E	1199	1207	Right-handed alpha
Helix 70	AH7	E	1210	1218	Right-handed alpha
Helix 71	AH8	E	1219	1273	Right-handed alpha
Helix 72	AH9	E	1279	1318	Right-handed alpha
Helix 73	AI1	E	1384	1390	Right-handed alpha
Helix 74	AI2	E	1414	1421	Right-handed alpha
Helix 75	AI3	E	1436	1441	Right-handed alpha
Helix 76	AI4	E	1447	1457	Right-handed alpha
Helix 77	AI5	E	1460	1465	Right-handed alpha
Helix 78	AI6	E	1483	1496	Right-handed alpha
Helix 79	AI7	E	1507	1511	Right-handed 310
Helix 80	AI8	E	1513	1528	Right-handed alpha
Helix 81	AI9	E	1539	1543	Right-handed 310
Helix 82	AJ1	E	1562	1569	Right-handed alpha
Helix 83	AJ2	E	1572	1582	Right-handed alpha

There are 25 sheets in PDB entry 7S5Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	182	first strand
Strand 2	A	195	204	anti-parallel
Strand 3	A	255	260	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	182	first strand
Strand 2	A	195	204	anti-parallel
Strand 3	A	187	192	anti-parallel
Strand 4	A	309	311	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	238	first strand
Strand 2	A	210	221	anti-parallel
Strand 3	A	282	291	anti-parallel
Strand 4	A	297	304	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	322	first strand
Strand 2	A	325	328	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	182	first strand
Strand 2	B	195	204	anti-parallel
Strand 3	B	255	260	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	182	first strand
Strand 2	B	195	204	anti-parallel
Strand 3	B	187	192	anti-parallel
Strand 4	B	309	311	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	238	first strand
Strand 2	B	210	221	anti-parallel
Strand 3	B	282	291	anti-parallel
Strand 4	B	297	304	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	322	first strand
Strand 2	B	325	328	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	182	first strand
Strand 2	C	195	204	anti-parallel
Strand 3	C	255	260	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	182	first strand
Strand 2	C	195	204	anti-parallel
Strand 3	C	187	192	anti-parallel
Strand 4	C	309	311	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	238	first strand
Strand 2	C	210	221	anti-parallel
Strand 3	C	282	291	anti-parallel
Strand 4	C	297	304	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	319	322	first strand
Strand 2	C	325	328	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	182	first strand
Strand 2	D	195	204	anti-parallel
Strand 3	D	255	260	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	182	first strand
Strand 2	D	195	204	anti-parallel
Strand 3	D	187	192	anti-parallel
Strand 4	D	309	311	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	238	first strand
Strand 2	D	210	221	anti-parallel
Strand 3	D	282	291	anti-parallel
Strand 4	D	297	304	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	319	322	first strand
Strand 2	D	325	328	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	678	680	first strand
Strand 2	E	704	705	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	683	685	first strand
Strand 2	E	700	701	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	687	688	first strand
Strand 2	E	732	733	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	771	773	first strand
Strand 2	E	850	853	parallel
Strand 3	E	883	887	parallel
Strand 4	E	710	713	parallel
Strand 5	E	899	904	parallel
Strand 6	E	907	912	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1345	1348	first strand
Strand 2	E	1366	1369	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1351	1353	first strand
Strand 2	E	1397	1400	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1502	1505	first strand
Strand 2	E	1532	1536	parallel
Strand 3	E	1374	1379	parallel
Strand 4	E	1548	1553	parallel
Strand 5	E	1556	1561	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1404	1405	first strand
Strand 2	E	1408	1409	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1434	1435	first strand
Strand 2	E	1474	1475	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7S5Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
7S5Y