Analysis of interatomic Contacts of Structural Units in PDB entry:
7S60

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7S60 entry

There are 5 chains in PDB entry 7S60 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 32	ASP 352
B	ARG 32	ASP 352
C	ARG 32	ASP 352
D	ARG 32	ASP 352
E	PRO 3	LYS 1582

There are 89 helices in PDB entry 7S60. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	65	Right-handed alpha
Helix 2	AA2	A	67	97	Right-handed alpha
Helix 3	AA3	A	116	129	Right-handed alpha
Helix 4	AA4	A	142	172	Right-handed alpha
Helix 5	AA5	A	173	180	Right-handed 310
Helix 6	AA6	A	330	333	Right-handed 310
Helix 7	AA7	B	59	65	Right-handed alpha
Helix 8	AA8	B	67	97	Right-handed alpha
Helix 9	AA9	B	117	129	Right-handed alpha
Helix 10	AB1	B	142	172	Right-handed alpha
Helix 11	AB2	B	173	179	Right-handed 310
Helix 12	AB3	B	330	333	Right-handed 310
Helix 13	AB4	C	59	65	Right-handed alpha
Helix 14	AB5	C	67	97	Right-handed alpha
Helix 15	AB6	C	117	129	Right-handed alpha
Helix 16	AB7	C	143	172	Right-handed alpha
Helix 17	AB8	C	176	179	Right-handed 310
Helix 18	AB9	C	271	275	Right-handed 310
Helix 19	AC1	C	330	333	Right-handed 310
Helix 20	AC2	C	345	351	Right-handed alpha
Helix 21	AC3	D	51	56	Right-handed 310
Helix 22	AC4	D	58	65	Right-handed alpha
Helix 23	AC5	D	67	97	Right-handed alpha
Helix 24	AC6	D	116	129	Right-handed alpha
Helix 25	AC7	D	142	172	Right-handed alpha
Helix 26	AC8	D	176	179	Right-handed 310
Helix 27	AC9	D	271	275	Right-handed 310
Helix 28	AD1	D	330	333	Right-handed 310
Helix 29	AD2	E	25	52	Right-handed alpha
Helix 30	AD3	E	71	98	Right-handed alpha
Helix 31	AD4	E	104	107	Right-handed 310
Helix 32	AD5	E	108	130	Right-handed alpha
Helix 33	AD6	E	137	161	Right-handed alpha
Helix 34	AD7	E	167	183	Right-handed alpha
Helix 35	AD8	E	185	191	Right-handed alpha
Helix 36	AD9	E	224	230	Right-handed alpha
Helix 37	AE1	E	233	240	Right-handed alpha
Helix 38	AE2	E	255	259	Right-handed 310
Helix 39	AE3	E	264	270	Right-handed alpha
Helix 40	AE4	E	285	296	Right-handed alpha
Helix 41	AE5	E	296	310	Right-handed alpha
Helix 42	AE6	E	316	329	Right-handed alpha
Helix 43	AE7	E	348	353	Right-handed alpha
Helix 44	AE8	E	355	401	Right-handed alpha
Helix 45	AE9	E	414	435	Right-handed alpha
Helix 46	AF1	E	435	440	Right-handed alpha
Helix 47	AF2	E	441	457	Right-handed alpha
Helix 48	AF3	E	458	461	Right-handed 310
Helix 49	AF4	E	464	469	Right-handed alpha
Helix 50	AF5	E	471	506	Right-handed alpha
Helix 51	AF6	E	506	513	Right-handed alpha
Helix 52	AF7	E	515	565	Right-handed alpha
Helix 53	AF8	E	573	589	Right-handed alpha
Helix 54	AF9	E	590	592	Right-handed 310
Helix 55	AG1	E	593	616	Right-handed alpha
Helix 56	AG2	E	721	728	Right-handed alpha
Helix 57	AG3	E	783	790	Right-handed alpha
Helix 58	AG4	E	795	807	Right-handed alpha
Helix 59	AG5	E	808	813	Right-handed alpha
Helix 60	AG6	E	817	821	Right-handed 310
Helix 61	AG7	E	832	841	Right-handed alpha
Helix 62	AG8	E	861	871	Right-handed alpha
Helix 63	AG9	E	890	894	Right-handed 310
Helix 64	AH1	E	913	920	Right-handed alpha
Helix 65	AH2	E	922	932	Right-handed alpha
Helix 66	AH3	E	999	1009	Right-handed alpha
Helix 67	AH4	E	1009	1039	Right-handed alpha
Helix 68	AH5	E	1062	1097	Right-handed alpha
Helix 69	AH6	E	1100	1106	Right-handed alpha
Helix 70	AH7	E	1109	1116	Right-handed alpha
Helix 71	AH8	E	1117	1124	Right-handed alpha
Helix 72	AH9	E	1126	1134	Right-handed alpha
Helix 73	AI1	E	1134	1160	Right-handed alpha
Helix 74	AI2	E	1164	1210	Right-handed alpha
Helix 75	AI3	E	1210	1215	Right-handed alpha
Helix 76	AI4	E	1219	1270	Right-handed alpha
Helix 77	AI5	E	1278	1295	Right-handed alpha
Helix 78	AI6	E	1295	1320	Right-handed alpha
Helix 79	AI7	E	1384	1391	Right-handed alpha
Helix 80	AI8	E	1392	1394	Right-handed 310
Helix 81	AI9	E	1414	1422	Right-handed alpha
Helix 82	AJ1	E	1436	1441	Right-handed alpha
Helix 83	AJ2	E	1447	1457	Right-handed alpha
Helix 84	AJ3	E	1460	1466	Right-handed alpha
Helix 85	AJ4	E	1483	1496	Right-handed alpha
Helix 86	AJ5	E	1513	1528	Right-handed alpha
Helix 87	AJ6	E	1539	1544	Right-handed alpha
Helix 88	AJ7	E	1562	1569	Right-handed alpha
Helix 89	AJ8	E	1572	1582	Right-handed alpha

There are 27 sheets in PDB entry 7S60. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	260	first strand
Strand 2	A	195	201	anti-parallel
Strand 3	A	187	192	anti-parallel
Strand 4	A	309	311	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	238	first strand
Strand 2	A	210	224	anti-parallel
Strand 3	A	282	291	anti-parallel
Strand 4	A	297	305	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	315	first strand
Strand 2	A	336	338	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	322	first strand
Strand 2	A	325	328	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	183	first strand
Strand 2	B	195	204	anti-parallel
Strand 3	B	256	260	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	183	first strand
Strand 2	B	195	204	anti-parallel
Strand 3	B	187	192	anti-parallel
Strand 4	B	309	311	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	238	first strand
Strand 2	B	210	220	anti-parallel
Strand 3	B	282	291	anti-parallel
Strand 4	B	297	305	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	224	first strand
Strand 2	B	230	231	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	315	first strand
Strand 2	B	336	338	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	322	first strand
Strand 2	B	325	328	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	183	first strand
Strand 2	C	195	204	anti-parallel
Strand 3	C	256	260	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	183	first strand
Strand 2	C	195	204	anti-parallel
Strand 3	C	187	192	anti-parallel
Strand 4	C	309	311	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	237	first strand
Strand 2	C	210	221	anti-parallel
Strand 3	C	248	249	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	237	first strand
Strand 2	C	210	221	anti-parallel
Strand 3	C	282	291	anti-parallel
Strand 4	C	297	304	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	319	322	first strand
Strand 2	C	325	328	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	182	first strand
Strand 2	D	203	204	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	260	first strand
Strand 2	D	195	201	anti-parallel
Strand 3	D	187	192	anti-parallel
Strand 4	D	309	311	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	230	238	first strand
Strand 2	D	210	224	anti-parallel
Strand 3	D	282	291	anti-parallel
Strand 4	D	297	305	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	313	315	first strand
Strand 2	D	336	338	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	319	322	first strand
Strand 2	D	325	328	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	678	680	first strand
Strand 2	E	704	705	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	697	701	first strand
Strand 2	E	683	688	anti-parallel
Strand 3	E	732	733	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	771	773	first strand
Strand 2	E	850	853	parallel
Strand 3	E	883	885	parallel
Strand 4	E	709	714	parallel
Strand 5	E	899	904	parallel
Strand 6	E	907	908	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1345	1350	first strand
Strand 2	E	1365	1369	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1352	1353	first strand
Strand 2	E	1397	1398	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1502	1505	first strand
Strand 2	E	1532	1536	parallel
Strand 3	E	1376	1379	parallel
Strand 4	E	1549	1553	parallel
Strand 5	E	1556	1561	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1434	1435	first strand
Strand 2	E	1474	1475	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7S60

Analysis of interatomic Contacts of Structural Units in PDB entry:
7S60