Analysis of interatomic Contacts of Structural Units in PDB entry:
7S62

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7S62 entry

There is 1 chain in PDB entry 7S62 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 22	CYS 1441

There are 18 helices in PDB entry 7S62. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	612	617	Right-handed alpha
Helix 2	AA2	A	664	669	Right-handed alpha
Helix 3	AA3	A	942	946	Right-handed 310
Helix 4	AA4	A	958	963	Right-handed alpha
Helix 5	AA5	A	968	979	Right-handed alpha
Helix 6	AA6	A	983	1002	Right-handed alpha
Helix 7	AA7	A	1003	1005	Right-handed 310
Helix 8	AA8	A	1022	1036	Right-handed alpha
Helix 9	AA9	A	1043	1057	Right-handed alpha
Helix 10	AB1	A	1076	1078	Right-handed 310
Helix 11	AB2	A	1079	1095	Right-handed alpha
Helix 12	AB3	A	1101	1113	Right-handed alpha
Helix 13	AB4	A	1120	1134	Right-handed alpha
Helix 14	AB5	A	1138	1150	Right-handed alpha
Helix 15	AB6	A	1180	1195	Right-handed alpha
Helix 16	AB7	A	1200	1217	Right-handed alpha
Helix 17	AB8	A	1226	1243	Right-handed alpha
Helix 18	AB9	A	1366	1376	Right-handed alpha

There are 26 sheets in PDB entry 7S62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	84	first strand
Strand 2	A	38	45	anti-parallel
Strand 3	A	27	30	anti-parallel
Strand 4	A	674	675	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	108	116	parallel
Strand 3	A	92	102	anti-parallel
Strand 4	A	52	59	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	124	first strand
Strand 2	A	141	144	anti-parallel
Strand 3	A	180	181	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	138	first strand
Strand 2	A	184	186	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	174	175	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	A	158	161	anti-parallel
Strand 3	A	197	199	anti-parallel
Strand 4	A	210	211	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	226	first strand
Strand 2	A	242	246	anti-parallel
Strand 3	A	296	297	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	233	first strand
Strand 2	A	331	340	parallel
Strand 3	A	315	322	anti-parallel
Strand 4	A	256	262	anti-parallel
Strand 5	A	283	289	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	239	first strand
Strand 2	A	300	301	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	348	first strand
Strand 2	A	363	371	anti-parallel
Strand 3	A	375	376	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	348	first strand
Strand 2	A	363	371	anti-parallel
Strand 3	A	401	406	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	357	first strand
Strand 2	A	446	447	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	395	first strand
Strand 2	A	381	385	anti-parallel
Strand 3	A	417	421	anti-parallel
Strand 4	A	440	444	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	458	first strand
Strand 2	A	470	479	anti-parallel
Strand 3	A	520	526	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	503	512	first strand
Strand 2	A	490	498	anti-parallel
Strand 3	A	535	542	anti-parallel
Strand 4	A	547	554	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	572	573	first strand
Strand 2	A	775	776	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	578	583	first strand
Strand 2	A	739	744	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	596	first strand
Strand 2	A	753	759	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	647	648	first strand
Strand 2	A	653	654	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	780	785	first strand
Strand 2	A	795	804	anti-parallel
Strand 3	A	839	848	anti-parallel
Strand 4	A	824	825	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	789	791	first strand
Strand 2	A	886	892	parallel
Strand 3	A	853	861	anti-parallel
Strand 4	A	814	816	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	896	913	first strand
Strand 2	A	1287	1307	anti-parallel
Strand 3	A	1251	1257	anti-parallel
Strand 4	A	1261	1267	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	896	913	first strand
Strand 2	A	1287	1307	anti-parallel
Strand 3	A	930	937	anti-parallel
Strand 4	A	1275	1280	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1152	1153	first strand
Strand 2	A	1158	1159	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1317	1324	first strand
Strand 2	A	1335	1342	anti-parallel
Strand 3	A	1401	1409	anti-parallel
Strand 4	A	1363	1365	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1381	1385	first strand
Strand 2	A	1388	1393	anti-parallel
Strand 3	A	1353	1358	anti-parallel
Strand 4	A	1419	1425	anti-parallel
Strand 5	A	1432	1437	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7S62

Analysis of interatomic Contacts of Structural Units in PDB entry:
7S62