Analysis of interatomic Contacts of Structural Units in PDB entry:
7S69


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7S69 entry

There are 2 chains in PDB entry 7S69 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 47THR 220
B
 LYS 47THR 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 7S69. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 67Right-handed 310
Helix 2
AA2
A
165 168Right-handed 310
Helix 3
AA3
A
169 173Right-handed 310
Helix 4
AA4
A
180 196Right-handed alpha
Helix 5
AA5
A
200 215Right-handed alpha
Helix 6
AA6
B
60 67Right-handed 310
Helix 7
AA7
B
165 168Right-handed 310
Helix 8
AA8
B
169 174Right-handed 310
Helix 9
AA9
B
180 196Right-handed alpha
Helix 10
AB1
B
200 216Right-handed alpha
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There are 2 sheets in PDB entry 7S69. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 74first strand
Strand 2
A
79 83anti-parallel
Strand 3
A
87 91anti-parallel
Strand 4
A
101 112anti-parallel
Strand 5
A
117 124anti-parallel
Strand 6
A
134 141anti-parallel
Strand 7
A
157 164parallel
Strand 8
A
146 154anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 74first strand
Strand 2
B
78 83anti-parallel
Strand 3
B
87 92anti-parallel
Strand 4
B
101 112anti-parallel
Strand 5
B
117 123anti-parallel
Strand 6
B
134 141anti-parallel
Strand 7
B
157 164parallel
Strand 8
B
146 154anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il