Analysis of interatomic Contacts of Structural Units in PDB entry:
7S6D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7S6D entry

There are 2 chains in PDB entry 7S6D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	TRP 966	ALA 1456
A	VAL 8	ALA 220

There are108 helices in PDB entry 7S6D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	966	979	Right-handed alpha
Helix 2	AA2	C	1012	1024	Right-handed alpha
Helix 3	AA3	C	1040	1053	Right-handed alpha
Helix 4	AA4	C	1065	1068	Right-handed 310
Helix 5	AA5	C	1080	1096	Right-handed alpha
Helix 6	AA6	C	1119	1136	Right-handed alpha
Helix 7	AA7	C	1151	1163	Right-handed alpha
Helix 8	AA8	C	1210	1222	Right-handed alpha
Helix 9	AA9	C	1234	1238	Right-handed 310
Helix 10	AB1	C	1240	1251	Right-handed alpha
Helix 11	AB2	C	1264	1276	Right-handed alpha
Helix 12	AB3	C	1296	1300	Right-handed 310
Helix 13	AB4	C	1301	1323	Right-handed alpha
Helix 14	AB5	C	1337	1341	Right-handed alpha
Helix 15	AB6	C	1349	1367	Right-handed alpha
Helix 16	AB7	C	1401	1415	Right-handed alpha
Helix 17	AB8	C	1426	1438	Right-handed alpha
Helix 18	AB9	C	1446	1456	Right-handed alpha
Helix 19	AC1	A	9	37	Right-handed alpha
Helix 20	AC2	A	55	66	Right-handed alpha
Helix 21	AC3	A	80	84	Right-handed 310
Helix 22	AC4	A	117	123	Right-handed alpha
Helix 23	AC5	A	125	142	Right-handed alpha
Helix 24	AC6	A	146	150	Right-handed 310
Helix 25	AC7	A	176	183	Right-handed alpha
Helix 26	AC8	A	187	197	Right-handed alpha
Helix 27	AC9	A	208	210	Right-handed 310
Helix 28	AD1	A	211	226	Right-handed alpha
Helix 29	AD2	A	243	248	Right-handed alpha
Helix 30	AD3	A	249	253	Right-handed 310
Helix 31	AD4	A	285	291	Right-handed alpha
Helix 32	AD5	A	317	333	Right-handed alpha
Helix 33	AD6	A	351	364	Right-handed alpha
Helix 34	AD7	A	379	384	Right-handed alpha
Helix 35	AD8	A	386	388	Right-handed 310
Helix 36	AD9	A	389	405	Right-handed alpha
Helix 37	AE1	A	487	504	Right-handed alpha
Helix 38	AE2	A	509	520	Right-handed alpha
Helix 39	AE3	A	537	548	Right-handed alpha
Helix 40	AE4	A	580	587	Right-handed alpha
Helix 41	AE5	A	587	602	Right-handed alpha
Helix 42	AE6	A	608	615	Right-handed alpha
Helix 43	AE7	A	624	646	Right-handed alpha
Helix 44	AE8	A	658	667	Right-handed alpha
Helix 45	AE9	A	671	686	Right-handed alpha
Helix 46	AF1	A	687	690	Right-handed 310
Helix 47	AF2	A	701	709	Right-handed alpha
Helix 48	AF3	A	712	714	Right-handed 310
Helix 49	AF4	A	733	747	Right-handed alpha
Helix 50	AF5	A	761	766	Right-handed 310
Helix 51	AF6	A	767	775	Right-handed alpha
Helix 52	AF7	A	797	801	Right-handed 310
Helix 53	AF8	A	802	812	Right-handed alpha
Helix 54	AF9	A	815	827	Right-handed alpha
Helix 55	AG1	A	840	850	Right-handed alpha
Helix 56	AG2	A	867	882	Right-handed alpha
Helix 57	AG3	A	886	892	Right-handed alpha
Helix 58	AG4	B	9	38	Right-handed alpha
Helix 59	AG5	B	55	66	Right-handed alpha
Helix 60	AG6	B	80	84	Right-handed 310
Helix 61	AG7	B	110	115	Right-handed alpha
Helix 62	AG8	B	117	123	Right-handed alpha
Helix 63	AG9	B	125	142	Right-handed alpha
Helix 64	AH1	B	145	150	Right-handed 310
Helix 65	AH2	B	185	197	Right-handed alpha
Helix 66	AH3	B	208	210	Right-handed 310
Helix 67	AH4	B	211	226	Right-handed alpha
Helix 68	AH5	B	249	253	Right-handed 310
Helix 69	AH6	B	285	292	Right-handed alpha
Helix 70	AH7	B	317	333	Right-handed alpha
Helix 71	AH8	B	352	365	Right-handed alpha
Helix 72	AH9	B	379	384	Right-handed alpha
Helix 73	AI1	B	386	388	Right-handed 310
Helix 74	AI2	B	389	405	Right-handed alpha
Helix 75	AI3	B	421	425	Right-handed 310
Helix 76	AI4	B	487	504	Right-handed alpha
Helix 77	AI5	B	509	520	Right-handed alpha
Helix 78	AI6	B	537	548	Right-handed alpha
Helix 79	AI7	B	580	586	Right-handed alpha
Helix 80	AI8	B	587	601	Right-handed alpha
Helix 81	AI9	B	608	615	Right-handed alpha
Helix 82	AJ1	B	624	646	Right-handed alpha
Helix 83	AJ2	B	658	667	Right-handed alpha
Helix 84	AJ3	B	671	687	Right-handed alpha
Helix 85	AJ4	B	688	690	Right-handed 310
Helix 86	AJ5	B	701	709	Right-handed alpha
Helix 87	AJ6	B	710	716	Right-handed 310
Helix 88	AJ7	B	733	746	Right-handed alpha
Helix 89	AJ8	B	762	766	Right-handed 310
Helix 90	AJ9	B	768	775	Right-handed alpha
Helix 91	AK1	B	797	801	Right-handed 310
Helix 92	AK2	B	802	812	Right-handed alpha
Helix 93	AK3	B	815	826	Right-handed alpha
Helix 94	AK4	B	840	852	Right-handed alpha
Helix 95	AK5	B	867	881	Right-handed alpha
Helix 96	AK6	B	886	892	Right-handed alpha
Helix 97	AK7	E	66	69	Right-handed 310
Helix 98	AK8	E	91	95	Right-handed 310
Helix 99	AK9	G	100	104	Right-handed 310
Helix 100	AL1	G	143	150	Right-handed alpha
Helix 101	AL2	G	205	209	Right-handed alpha
Helix 102	AL3	D	55	59	Right-handed 310
Helix 103	AL4	D	66	69	Right-handed 310
Helix 104	AL5	D	91	95	Right-handed 310
Helix 105	AL6	D	163	165	Right-handed 310
Helix 106	AL7	F	100	104	Right-handed 310
Helix 107	AL8	F	144	150	Right-handed alpha
Helix 108	AL9	F	204	209	Right-handed alpha

There are 35 sheets in PDB entry 7S6D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1027	1033	first strand
Strand 2	C	999	1005	parallel
Strand 3	C	1060	1063	parallel
Strand 4	C	1100	1106	parallel
Strand 5	C	1140	1146	parallel
Strand 6	C	1170	1173	parallel
Strand 7	C	1178	1185	anti-parallel
Strand 8	C	980	987	anti-parallel
Strand 9	C	1421	1422	anti-parallel
Strand 10	C	1370	1375	parallel
Strand 11	C	1330	1336	parallel
Strand 12	C	1282	1287	parallel
Strand 13	C	1202	1206	parallel
Strand 14	C	1227	1231	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1071	1072	first strand
Strand 2	C	1075	1079	anti-parallel

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There are 22 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	429	first strand
Strand 2	A	374	377	parallel
Strand 3	A	341	343	parallel
Strand 4	A	444	448	parallel
Strand 5	A	455	463	anti-parallel
Strand 6	A	297	306	anti-parallel
Strand 7	A	40	48	anti-parallel
Strand 8	A	276	284	anti-parallel
Strand 9	A	231	238	anti-parallel
Strand 10	A	154	159	parallel
Strand 11	A	203	207	parallel
Strand 12	B	203	207	anti-parallel
Strand 13	B	154	159	parallel
Strand 14	B	231	238	parallel
Strand 15	B	276	284	anti-parallel
Strand 16	B	40	48	anti-parallel
Strand 17	B	297	306	anti-parallel
Strand 18	B	455	463	anti-parallel
Strand 19	B	444	450	anti-parallel
Strand 20	B	341	343	parallel
Strand 21	B	374	377	parallel
Strand 22	B	427	429	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	99	100	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	908	909	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	407	first strand
Strand 2	A	434	435	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	481	485	first strand
Strand 2	A	526	530	anti-parallel
Strand 3	A	554	558	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	787	788	first strand
Strand 2	A	653	655	parallel
Strand 3	A	564	569	parallel
Strand 4	A	828	833	parallel
Strand 5	A	856	859	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	716	723	first strand
Strand 2	A	726	732	anti-parallel
Strand 3	A	693	698	anti-parallel
Strand 4	A	751	752	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	99	100	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	908	909	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	406	407	first strand
Strand 2	B	434	435	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	481	485	first strand
Strand 2	B	526	530	anti-parallel
Strand 3	B	554	558	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	794	796	first strand
Strand 2	B	787	789	anti-parallel
Strand 3	B	652	655	parallel
Strand 4	B	564	569	parallel
Strand 5	B	828	833	parallel
Strand 6	B	856	859	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	693	698	first strand
Strand 2	B	726	732	anti-parallel
Strand 3	B	717	723	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	9	first strand
Strand 2	E	20	27	anti-parallel
Strand 3	E	82	87	anti-parallel
Strand 4	E	72	77	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	14	first strand
Strand 2	E	114	118	parallel
Strand 3	E	96	102	anti-parallel
Strand 4	E	36	41	anti-parallel
Strand 5	E	47	53	anti-parallel
Strand 6	E	62	64	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	14	first strand
Strand 2	E	114	118	parallel
Strand 3	E	96	102	anti-parallel
Strand 4	E	109	110	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	131	first strand
Strand 2	E	143	150	anti-parallel
Strand 3	E	186	191	anti-parallel
Strand 4	E	171	172	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	161	first strand
Strand 2	E	201	206	anti-parallel
Strand 3	E	215	218	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	21	22	first strand
Strand 2	G	35	41	anti-parallel
Strand 3	G	91	96	anti-parallel
Strand 4	G	83	88	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	26	29	first strand
Strand 2	G	125	128	parallel
Strand 3	G	105	111	anti-parallel
Strand 4	G	54	59	anti-parallel
Strand 5	G	65	70	anti-parallel
Strand 6	G	74	75	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	151	155	first strand
Strand 2	G	200	204	anti-parallel
Strand 3	G	181	182	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	158	161	first strand
Strand 2	G	195	197	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	167	171	first strand
Strand 2	G	213	219	anti-parallel
Strand 3	G	228	232	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	9	first strand
Strand 2	D	19	27	anti-parallel
Strand 3	D	82	88	anti-parallel
Strand 4	D	72	77	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	14	first strand
Strand 2	D	114	118	parallel
Strand 3	D	96	102	anti-parallel
Strand 4	D	36	41	anti-parallel
Strand 5	D	47	53	anti-parallel
Strand 6	D	62	64	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	14	first strand
Strand 2	D	114	118	parallel
Strand 3	D	96	102	anti-parallel
Strand 4	D	109	110	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	131	first strand
Strand 2	D	143	152	anti-parallel
Strand 3	D	183	191	anti-parallel
Strand 4	D	170	172	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	131	first strand
Strand 2	D	143	152	anti-parallel
Strand 3	D	183	191	anti-parallel
Strand 4	D	176	177	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	161	first strand
Strand 2	D	202	206	anti-parallel
Strand 3	D	215	217	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	21	22	first strand
Strand 2	F	35	41	anti-parallel
Strand 3	F	91	96	anti-parallel
Strand 4	F	83	88	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	29	first strand
Strand 2	F	125	128	parallel
Strand 3	F	105	111	anti-parallel
Strand 4	F	54	59	anti-parallel
Strand 5	F	66	70	anti-parallel
Strand 6	F	74	75	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	138	140	first strand
Strand 2	F	154	157	anti-parallel
Strand 3	F	198	201	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	167	171	first strand
Strand 2	F	215	219	anti-parallel
Strand 3	F	227	229	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7S6D

Analysis of interatomic Contacts of Structural Units in PDB entry:
7S6D