Analysis of interatomic Contacts of Structural Units in PDB entry:
7S6E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7S6E entry

There are 2 chains in PDB entry 7S6E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 9LEU 405
B
 ALA 6LEU 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 7S6E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 48Right-handed alpha
Helix 2
AA2
A
70 84Right-handed alpha
Helix 3
AA3
A
95 109Right-handed alpha
Helix 4
AA4
A
134 137Right-handed 310
Helix 5
AA5
A
138 149Right-handed alpha
Helix 6
AA6
A
164 182Right-handed alpha
Helix 7
AA7
A
198 209Right-handed alpha
Helix 8
AA8
A
222 234Right-handed alpha
Helix 9
AA9
A
237 240Right-handed 310
Helix 10
AB1
A
250 258Right-handed alpha
Helix 11
AB2
A
259 262Right-handed 310
Helix 12
AB3
A
277 292Right-handed alpha
Helix 13
AB4
A
298 319Right-handed alpha
Helix 14
AB5
A
322 331Right-handed alpha
Helix 15
AB6
B
27 48Right-handed alpha
Helix 16
AB7
B
70 84Right-handed alpha
Helix 17
AB8
B
95 109Right-handed alpha
Helix 18
AB9
B
134 137Right-handed 310
Helix 19
AC1
B
138 149Right-handed alpha
Helix 20
AC2
B
164 182Right-handed alpha
Helix 21
AC3
B
198 209Right-handed alpha
Helix 22
AC4
B
222 234Right-handed alpha
Helix 23
AC5
B
237 240Right-handed 310
Helix 24
AC6
B
250 258Right-handed alpha
Helix 25
AC7
B
259 262Right-handed 310
Helix 26
AC8
B
277 292Right-handed alpha
Helix 27
AC9
B
298 319Right-handed alpha
Helix 28
AD1
B
322 331Right-handed alpha
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There are 8 sheets in PDB entry 7S6E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
56 66anti-parallel
Strand 3
A
13 21parallel
Strand 4
A
90 92parallel
Strand 5
A
113 115parallel
Strand 6
A
128 130parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 191first strand
Strand 2
A
157 162parallel
Strand 3
A
213 218parallel
Strand 4
A
242 246parallel
Strand 5
A
266 269parallel
Strand 6
A
355 359anti-parallel
Strand 7
A
365 370anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 337first strand
Strand 2
A
340 344anti-parallel
Strand 3
A
350 351anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 393first strand
Strand 2
A
400 404anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
56 66anti-parallel
Strand 3
B
13 21parallel
Strand 4
B
90 92parallel
Strand 5
B
113 115parallel
Strand 6
B
128 130parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 191first strand
Strand 2
B
157 162parallel
Strand 3
B
213 218parallel
Strand 4
B
242 246parallel
Strand 5
B
266 269parallel
Strand 6
B
355 359anti-parallel
Strand 7
B
365 370anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
334 337first strand
Strand 2
B
340 344anti-parallel
Strand 3
B
350 351anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
390 393first strand
Strand 2
B
400 404anti-parallel
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