Analysis of interatomic Contacts of Structural Units in PDB entry:
7S6M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7S6M entry

There are 5 chains in PDB entry 7S6M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
O	C 1	G 5
P	C 22	G 26
N	C 1	G 5
D	ALA 531	HIS 1020
B	ALA 531	ILE 673

There are 52 helices in PDB entry 7S6M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	534	538	Right-handed 310
Helix 2	AA2	D	606	623	Right-handed alpha
Helix 3	AA3	D	666	677	Right-handed alpha
Helix 4	AA4	D	678	689	Right-handed alpha
Helix 5	AA5	D	702	722	Right-handed alpha
Helix 6	AA6	D	725	740	Right-handed alpha
Helix 7	AA7	D	754	779	Right-handed alpha
Helix 8	AA8	D	788	798	Right-handed alpha
Helix 9	AA9	D	808	822	Right-handed alpha
Helix 10	AB1	D	843	848	Right-handed alpha
Helix 11	AB2	D	848	853	Right-handed alpha
Helix 12	AB3	D	865	876	Right-handed alpha
Helix 13	AB4	D	900	907	Right-handed alpha
Helix 14	AB5	D	958	961	Right-handed 310
Helix 15	AB6	D	993	995	Right-handed 310
Helix 16	AB7	D	1011	1019	Right-handed alpha
Helix 17	AB8	B	534	538	Right-handed 310
Helix 18	AB9	B	606	623	Right-handed alpha
Helix 19	AC1	B	666	677	Right-handed alpha
Helix 20	AC2	B	678	689	Right-handed alpha
Helix 21	AC3	B	702	722	Right-handed alpha
Helix 22	AC4	B	725	740	Right-handed alpha
Helix 23	AC5	B	754	779	Right-handed alpha
Helix 24	AC6	B	788	798	Right-handed alpha
Helix 25	AC7	B	808	822	Right-handed alpha
Helix 26	AC8	B	843	848	Right-handed alpha
Helix 27	AC9	B	848	853	Right-handed alpha
Helix 28	AD1	B	865	876	Right-handed alpha
Helix 29	AD2	B	900	907	Right-handed alpha
Helix 30	AD3	B	958	961	Right-handed 310
Helix 31	AD4	B	993	995	Right-handed 310
Helix 32	AD5	B	1011	1019	Right-handed alpha
Helix 33	AD6	A	54	59	Right-handed alpha
Helix 34	AD7	A	66	70	Right-handed alpha
Helix 35	AD8	A	73	77	Right-handed 310
Helix 36	AD9	A	78	89	Right-handed alpha
Helix 37	AE1	A	228	256	Right-handed alpha
Helix 38	AE2	A	257	268	Right-handed alpha
Helix 39	AE3	A	275	290	Right-handed alpha
Helix 40	AE4	A	336	338	Right-handed 310
Helix 41	AE5	A	339	344	Right-handed alpha
Helix 42	AE6	A	345	347	Right-handed 310
Helix 43	AE7	C	54	59	Right-handed alpha
Helix 44	AE8	C	66	70	Right-handed alpha
Helix 45	AE9	C	73	77	Right-handed 310
Helix 46	AF1	C	78	89	Right-handed alpha
Helix 47	AF2	C	225	256	Right-handed alpha
Helix 48	AF3	C	257	268	Right-handed alpha
Helix 49	AF4	C	275	290	Right-handed alpha
Helix 50	AF5	C	336	338	Right-handed 310
Helix 51	AF6	C	339	344	Right-handed alpha
Helix 52	AF7	C	345	347	Right-handed 310

There are 20 sheets in PDB entry 7S6M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	543	545	first strand
Strand 2	D	566	577	anti-parallel
Strand 3	D	583	591	anti-parallel
Strand 4	D	597	604	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	543	545	first strand
Strand 2	D	566	577	anti-parallel
Strand 3	D	554	561	anti-parallel
Strand 4	D	639	640	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	547	548	first strand
Strand 2	D	551	552	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	799	802	first strand
Strand 2	D	829	841	anti-parallel
Strand 3	D	997	1009	anti-parallel
Strand 4	D	916	925	anti-parallel
Strand 5	D	857	862	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	895	897	first strand
Strand 2	D	988	991	anti-parallel
Strand 3	D	947	950	anti-parallel
Strand 4	D	929	932	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	974	976	first strand
Strand 2	D	952	956	anti-parallel
Strand 3	D	984	986	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	962	963	first strand
Strand 2	D	968	969	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	543	545	first strand
Strand 2	B	566	577	anti-parallel
Strand 3	B	583	591	anti-parallel
Strand 4	B	597	604	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	543	545	first strand
Strand 2	B	566	577	anti-parallel
Strand 3	B	554	561	anti-parallel
Strand 4	B	639	640	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	547	548	first strand
Strand 2	B	551	552	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	799	802	first strand
Strand 2	B	829	841	anti-parallel
Strand 3	B	997	1009	anti-parallel
Strand 4	B	916	925	anti-parallel
Strand 5	B	857	862	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	895	897	first strand
Strand 2	B	988	991	anti-parallel
Strand 3	B	947	950	anti-parallel
Strand 4	B	929	932	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	974	976	first strand
Strand 2	B	952	956	anti-parallel
Strand 3	B	984	986	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	962	963	first strand
Strand 2	B	968	969	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	53	first strand
Strand 2	A	33	40	anti-parallel
Strand 3	A	9	13	anti-parallel
Strand 4	A	71	72	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	292	first strand
Strand 2	A	330	331	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	304	first strand
Strand 2	A	309	311	anti-parallel
Strand 3	A	324	325	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	53	first strand
Strand 2	C	33	40	anti-parallel
Strand 3	C	9	13	anti-parallel
Strand 4	C	71	72	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	292	first strand
Strand 2	C	330	331	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	302	304	first strand
Strand 2	C	309	311	anti-parallel
Strand 3	C	324	325	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7S6M

Analysis of interatomic Contacts of Structural Units in PDB entry:
7S6M