Analysis of interatomic Contacts of Structural Units in PDB entry:
7S7V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7S7V entry

There are 8 chains in PDB entry 7S7V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	LEU 239
A	VAL 243	VAL 524
B	SER 0	LEU 239
B	VAL 243	LEU 522
C	ASN 2	LEU 239
C	VAL 243	LEU 522
D	SER 0	LEU 239
D	VAL 243	LEU 522

There are 87 helices in PDB entry 7S7V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	30	Right-handed alpha
Helix 2	AA2	A	44	53	Right-handed alpha
Helix 3	AA3	A	54	57	Right-handed 310
Helix 4	AA4	A	66	73	Right-handed alpha
Helix 5	AA5	A	87	90	Right-handed 310
Helix 6	AA6	A	179	184	Right-handed 310
Helix 7	AA7	A	231	236	Right-handed 310
Helix 8	AA8	A	243	247	Right-handed 310
Helix 9	AA9	A	253	256	Right-handed 310
Helix 10	AB1	A	257	262	Right-handed alpha
Helix 11	AB2	A	329	344	Right-handed alpha
Helix 12	AB3	A	363	369	Right-handed alpha
Helix 13	AB4	A	373	380	Right-handed alpha
Helix 14	AB5	A	381	383	Right-handed 310
Helix 15	AB6	A	389	395	Right-handed alpha
Helix 16	AB7	A	398	407	Right-handed alpha
Helix 17	AB8	A	419	427	Right-handed alpha
Helix 18	AB9	A	440	445	Right-handed alpha
Helix 19	AC1	A	468	474	Right-handed alpha
Helix 20	AC2	A	476	483	Right-handed alpha
Helix 21	AC3	A	489	502	Right-handed alpha
Helix 22	AC4	A	506	518	Right-handed alpha
Helix 23	AC5	B	12	30	Right-handed alpha
Helix 24	AC6	B	44	53	Right-handed alpha
Helix 25	AC7	B	54	57	Right-handed 310
Helix 26	AC8	B	66	73	Right-handed alpha
Helix 27	AC9	B	178	184	Right-handed 310
Helix 28	AD1	B	231	236	Right-handed 310
Helix 29	AD2	B	243	247	Right-handed 310
Helix 30	AD3	B	253	256	Right-handed 310
Helix 31	AD4	B	257	262	Right-handed alpha
Helix 32	AD5	B	322	327	Right-handed 310
Helix 33	AD6	B	330	344	Right-handed alpha
Helix 34	AD7	B	363	369	Right-handed alpha
Helix 35	AD8	B	373	380	Right-handed alpha
Helix 36	AD9	B	381	383	Right-handed 310
Helix 37	AE1	B	389	394	Right-handed alpha
Helix 38	AE2	B	398	407	Right-handed alpha
Helix 39	AE3	B	419	427	Right-handed alpha
Helix 40	AE4	B	440	445	Right-handed alpha
Helix 41	AE5	B	468	474	Right-handed alpha
Helix 42	AE6	B	476	483	Right-handed alpha
Helix 43	AE7	B	489	502	Right-handed alpha
Helix 44	AE8	B	506	518	Right-handed alpha
Helix 45	AE9	C	12	30	Right-handed alpha
Helix 46	AF1	C	44	53	Right-handed alpha
Helix 47	AF2	C	54	57	Right-handed 310
Helix 48	AF3	C	66	73	Right-handed alpha
Helix 49	AF4	C	87	90	Right-handed 310
Helix 50	AF5	C	179	184	Right-handed 310
Helix 51	AF6	C	231	236	Right-handed 310
Helix 52	AF7	C	243	247	Right-handed 310
Helix 53	AF8	C	253	256	Right-handed 310
Helix 54	AF9	C	257	262	Right-handed alpha
Helix 55	AG1	C	329	344	Right-handed alpha
Helix 56	AG2	C	363	370	Right-handed alpha
Helix 57	AG3	C	373	380	Right-handed alpha
Helix 58	AG4	C	381	383	Right-handed 310
Helix 59	AG5	C	389	395	Right-handed alpha
Helix 60	AG6	C	398	407	Right-handed alpha
Helix 61	AG7	C	419	427	Right-handed alpha
Helix 62	AG8	C	440	445	Right-handed alpha
Helix 63	AG9	C	468	474	Right-handed alpha
Helix 64	AH1	C	476	483	Right-handed alpha
Helix 65	AH2	C	489	502	Right-handed alpha
Helix 66	AH3	C	506	518	Right-handed alpha
Helix 67	AH4	D	12	30	Right-handed alpha
Helix 68	AH5	D	44	53	Right-handed alpha
Helix 69	AH6	D	54	57	Right-handed 310
Helix 70	AH7	D	66	73	Right-handed alpha
Helix 71	AH8	D	178	184	Right-handed 310
Helix 72	AH9	D	231	236	Right-handed 310
Helix 73	AI1	D	243	247	Right-handed 310
Helix 74	AI2	D	253	256	Right-handed 310
Helix 75	AI3	D	257	262	Right-handed alpha
Helix 76	AI4	D	329	344	Right-handed alpha
Helix 77	AI5	D	363	369	Right-handed alpha
Helix 78	AI6	D	373	380	Right-handed alpha
Helix 79	AI7	D	381	384	Right-handed 310
Helix 80	AI8	D	389	395	Right-handed alpha
Helix 81	AI9	D	398	407	Right-handed alpha
Helix 82	AJ1	D	419	427	Right-handed alpha
Helix 83	AJ2	D	440	445	Right-handed alpha
Helix 84	AJ3	D	468	474	Right-handed alpha
Helix 85	AJ4	D	476	483	Right-handed alpha
Helix 86	AJ5	D	489	502	Right-handed alpha
Helix 87	AJ6	D	506	518	Right-handed alpha

There are 16 sheets in PDB entry 7S7V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	10	first strand
Strand 2	A	33	39	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	65	first strand
Strand 2	A	462	467	anti-parallel
Strand 3	A	345	347	anti-parallel

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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	86	first strand
Strand 2	A	91	101	anti-parallel
Strand 3	A	107	118	anti-parallel
Strand 4	A	267	275	anti-parallel
Strand 5	A	280	290	anti-parallel
Strand 6	A	293	303	anti-parallel
Strand 7	A	186	197	parallel
Strand 8	A	200	211	anti-parallel
Strand 9	A	216	223	anti-parallel
Strand 10	A	148	158	anti-parallel
Strand 11	A	130	139	anti-parallel
Strand 12	A	80	86	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	412	415	first strand
Strand 2	A	385	388	parallel
Strand 3	A	432	436	parallel
Strand 4	A	357	362	anti-parallel
Strand 5	A	447	449	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	10	first strand
Strand 2	B	33	39	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	65	first strand
Strand 2	B	462	467	anti-parallel
Strand 3	B	345	347	anti-parallel

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There are 12 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	86	first strand
Strand 2	B	91	101	anti-parallel
Strand 3	B	107	118	anti-parallel
Strand 4	B	267	275	anti-parallel
Strand 5	B	280	290	anti-parallel
Strand 6	B	293	303	anti-parallel
Strand 7	B	186	197	parallel
Strand 8	B	200	211	anti-parallel
Strand 9	B	216	223	anti-parallel
Strand 10	B	148	158	anti-parallel
Strand 11	B	130	139	anti-parallel
Strand 12	B	81	86	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	412	415	first strand
Strand 2	B	385	388	parallel
Strand 3	B	432	436	parallel
Strand 4	B	357	362	anti-parallel
Strand 5	B	447	449	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	10	first strand
Strand 2	C	33	39	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	65	first strand
Strand 2	C	462	467	anti-parallel
Strand 3	C	345	347	anti-parallel

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There are 12 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	86	first strand
Strand 2	C	91	101	anti-parallel
Strand 3	C	107	118	anti-parallel
Strand 4	C	267	275	anti-parallel
Strand 5	C	280	290	anti-parallel
Strand 6	C	293	303	anti-parallel
Strand 7	C	186	197	parallel
Strand 8	C	200	211	anti-parallel
Strand 9	C	216	223	anti-parallel
Strand 10	C	148	158	anti-parallel
Strand 11	C	130	139	anti-parallel
Strand 12	C	81	86	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	412	415	first strand
Strand 2	C	385	388	parallel
Strand 3	C	432	436	parallel
Strand 4	C	357	362	anti-parallel
Strand 5	C	447	449	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	10	first strand
Strand 2	D	33	39	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	65	first strand
Strand 2	D	462	467	anti-parallel
Strand 3	D	345	347	anti-parallel

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There are 12 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	86	first strand
Strand 2	D	91	101	anti-parallel
Strand 3	D	107	118	anti-parallel
Strand 4	D	267	275	anti-parallel
Strand 5	D	280	290	anti-parallel
Strand 6	D	293	303	anti-parallel
Strand 7	D	186	197	parallel
Strand 8	D	200	211	anti-parallel
Strand 9	D	216	223	anti-parallel
Strand 10	D	148	158	anti-parallel
Strand 11	D	130	139	anti-parallel
Strand 12	D	81	86	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	413	415	first strand
Strand 2	D	386	388	parallel
Strand 3	D	432	436	parallel
Strand 4	D	357	362	anti-parallel
Strand 5	D	447	449	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7S7V

Analysis of interatomic Contacts of Structural Units in PDB entry:
7S7V