Analysis of interatomic Contacts of Structural Units in PDB entry:
7S80


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7S80 entry

There is 1 chain in PDB entry 7S80 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ASP 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7S80. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 30Right-handed alpha
Helix 2
AA2
A
44 53Right-handed alpha
Helix 3
AA3
A
54 57Right-handed 310
Helix 4
AA4
A
66 72Right-handed alpha
Helix 5
AA5
A
81 98Right-handed alpha
Helix 6
AA6
A
117 124Right-handed alpha
Helix 7
AA7
A
127 135Right-handed alpha
Helix 8
AA8
A
143 148Right-handed alpha
Helix 9
AA9
A
152 161Right-handed alpha
Helix 10
AB1
A
173 181Right-handed alpha
Helix 11
AB2
A
222 228Right-handed alpha
Helix 12
AB3
A
229 237Right-handed alpha
Helix 13
AB4
A
243 256Right-handed alpha
Helix 14
AB5
A
260 272Right-handed alpha
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There are 3 sheets in PDB entry 7S80. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 10first strand
Strand 2
A
33 40parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
216 221anti-parallel
Strand 3
A
99 101anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 169first strand
Strand 2
A
139 142parallel
Strand 3
A
186 190parallel
Strand 4
A
111 116anti-parallel
Strand 5
A
201 203anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il