Analysis of interatomic Contacts of Structural Units in PDB entry:
7S87


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7S87 entry

There are 2 chains in PDB entry 7S87 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 155HIS 536
B
 ALA 155HIS 536
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 7S87. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
156 162Right-handed 310
Helix 2
AA2
A
165 179Right-handed alpha
Helix 3
AA3
A
180 194Right-handed alpha
Helix 4
AA4
A
205 209Right-handed 310
Helix 5
AA5
A
233 240Right-handed alpha
Helix 6
AA6
A
282 298Right-handed alpha
Helix 7
AA7
A
300 304Right-handed 310
Helix 8
AA8
A
320 333Right-handed alpha
Helix 9
AA9
A
334 336Right-handed 310
Helix 10
AB1
A
351 355Right-handed 310
Helix 11
AB2
A
356 374Right-handed alpha
Helix 12
AB3
A
375 378Right-handed 310
Helix 13
AB4
A
405 419Right-handed alpha
Helix 14
AB5
A
436 440Right-handed 310
Helix 15
AB6
A
451 466Right-handed alpha
Helix 16
AB7
A
480 491Right-handed alpha
Helix 17
AB8
A
498 505Right-handed alpha
Helix 18
AB9
A
507 523Right-handed alpha
Helix 19
AC1
A
528 532Right-handed 310
Helix 20
AC2
B
156 161Right-handed alpha
Helix 21
AC3
B
166 179Right-handed alpha
Helix 22
AC4
B
180 194Right-handed alpha
Helix 23
AC5
B
205 209Right-handed 310
Helix 24
AC6
B
233 240Right-handed alpha
Helix 25
AC7
B
283 298Right-handed alpha
Helix 26
AC8
B
300 304Right-handed 310
Helix 27
AC9
B
320 333Right-handed alpha
Helix 28
AD1
B
334 336Right-handed 310
Helix 29
AD2
B
356 373Right-handed alpha
Helix 30
AD3
B
405 419Right-handed alpha
Helix 31
AD4
B
436 440Right-handed 310
Helix 32
AD5
B
451 466Right-handed alpha
Helix 33
AD6
B
480 491Right-handed alpha
Helix 34
AD7
B
498 505Right-handed alpha
Helix 35
AD8
B
507 523Right-handed alpha
Helix 36
AD9
B
528 532Right-handed 310
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There are 7 sheets in PDB entry 7S87. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 212first strand
Strand 2
A
215 217anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 223first strand
Strand 2
A
244 250parallel
Strand 3
A
307 312parallel
Strand 4
A
338 342parallel
Strand 5
A
395 400parallel
Strand 6
A
423 426parallel
Strand 7
A
472 475parallel
Strand 8
A
492 497parallel
Strand 9
A
221 223parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 266first strand
Strand 2
A
271 274anti-parallel
Strand 3
A
445 448anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 212first strand
Strand 2
B
215 217anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 223first strand
Strand 2
B
244 250parallel
Strand 3
B
307 312parallel
Strand 4
B
338 342parallel
Strand 5
B
395 399parallel
Strand 6
B
423 426parallel
Strand 7
B
472 475parallel
Strand 8
B
492 497parallel
Strand 9
B
221 223parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 255first strand
Strand 2
B
280 282anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 266first strand
Strand 2
B
271 274anti-parallel
Strand 3
B
445 448anti-parallel
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