Analysis of interatomic Contacts of Structural Units in PDB entry:
7S88

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7S88 entry

There are 4 chains in PDB entry 7S88 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 24	GLN 637
B	GLN 24	GLN 637
C	GLN 24	GLN 637
D	GLN 24	GLN 637

There are128 helices in PDB entry 7S88. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	47	Right-handed alpha
Helix 2	AA2	A	47	55	Right-handed alpha
Helix 3	AA3	A	57	65	Right-handed alpha
Helix 4	AA4	A	81	89	Right-handed alpha
Helix 5	AA5	A	91	102	Right-handed alpha
Helix 6	AA6	A	103	108	Right-handed 310
Helix 7	AA7	A	112	116	Right-handed 310
Helix 8	AA8	A	119	127	Right-handed alpha
Helix 9	AA9	A	129	139	Right-handed alpha
Helix 10	AB1	A	165	173	Right-handed alpha
Helix 11	AB2	A	175	184	Right-handed alpha
Helix 12	AB3	A	198	205	Right-handed alpha
Helix 13	AB4	A	208	221	Right-handed alpha
Helix 14	AB5	A	242	250	Right-handed alpha
Helix 15	AB6	A	252	260	Right-handed alpha
Helix 16	AB7	A	291	298	Right-handed alpha
Helix 17	AB8	A	303	310	Right-handed 310
Helix 18	AB9	A	312	324	Right-handed alpha
Helix 19	AC1	A	324	349	Right-handed alpha
Helix 20	AC2	A	372	377	Right-handed alpha
Helix 21	AC3	A	379	404	Right-handed alpha
Helix 22	AC4	A	405	410	Right-handed alpha
Helix 23	AC5	A	414	423	Right-handed alpha
Helix 24	AC6	A	424	445	Right-handed alpha
Helix 25	AC7	A	450	464	Right-handed alpha
Helix 26	AC8	A	465	472	Right-handed 310
Helix 27	AC9	A	477	487	Right-handed alpha
Helix 28	AD1	A	488	512	Right-handed alpha
Helix 29	AD2	A	525	538	Right-handed alpha
Helix 30	AD3	A	552	566	Right-handed alpha
Helix 31	AD4	A	568	588	Right-handed alpha
Helix 32	AD5	A	588	608	Right-handed alpha
Helix 33	AD6	B	25	47	Right-handed alpha
Helix 34	AD7	B	47	55	Right-handed alpha
Helix 35	AD8	B	57	65	Right-handed alpha
Helix 36	AD9	B	81	89	Right-handed alpha
Helix 37	AE1	B	91	102	Right-handed alpha
Helix 38	AE2	B	103	108	Right-handed 310
Helix 39	AE3	B	112	116	Right-handed 310
Helix 40	AE4	B	119	127	Right-handed alpha
Helix 41	AE5	B	129	139	Right-handed alpha
Helix 42	AE6	B	165	173	Right-handed alpha
Helix 43	AE7	B	175	184	Right-handed alpha
Helix 44	AE8	B	198	205	Right-handed alpha
Helix 45	AE9	B	208	221	Right-handed alpha
Helix 46	AF1	B	242	250	Right-handed alpha
Helix 47	AF2	B	252	260	Right-handed alpha
Helix 48	AF3	B	291	298	Right-handed alpha
Helix 49	AF4	B	303	310	Right-handed 310
Helix 50	AF5	B	312	324	Right-handed alpha
Helix 51	AF6	B	324	349	Right-handed alpha
Helix 52	AF7	B	372	377	Right-handed alpha
Helix 53	AF8	B	379	404	Right-handed alpha
Helix 54	AF9	B	405	410	Right-handed alpha
Helix 55	AG1	B	414	423	Right-handed alpha
Helix 56	AG2	B	424	445	Right-handed alpha
Helix 57	AG3	B	450	464	Right-handed alpha
Helix 58	AG4	B	465	472	Right-handed 310
Helix 59	AG5	B	477	487	Right-handed alpha
Helix 60	AG6	B	488	512	Right-handed alpha
Helix 61	AG7	B	525	538	Right-handed alpha
Helix 62	AG8	B	552	566	Right-handed alpha
Helix 63	AG9	B	568	588	Right-handed alpha
Helix 64	AH1	B	588	608	Right-handed alpha
Helix 65	AH2	C	25	47	Right-handed alpha
Helix 66	AH3	C	47	55	Right-handed alpha
Helix 67	AH4	C	57	65	Right-handed alpha
Helix 68	AH5	C	81	89	Right-handed alpha
Helix 69	AH6	C	91	102	Right-handed alpha
Helix 70	AH7	C	103	108	Right-handed 310
Helix 71	AH8	C	112	116	Right-handed 310
Helix 72	AH9	C	119	127	Right-handed alpha
Helix 73	AI1	C	129	139	Right-handed alpha
Helix 74	AI2	C	165	173	Right-handed alpha
Helix 75	AI3	C	175	184	Right-handed alpha
Helix 76	AI4	C	198	205	Right-handed alpha
Helix 77	AI5	C	208	221	Right-handed alpha
Helix 78	AI6	C	242	250	Right-handed alpha
Helix 79	AI7	C	252	260	Right-handed alpha
Helix 80	AI8	C	291	298	Right-handed alpha
Helix 81	AI9	C	303	310	Right-handed 310
Helix 82	AJ1	C	312	324	Right-handed alpha
Helix 83	AJ2	C	324	349	Right-handed alpha
Helix 84	AJ3	C	372	377	Right-handed alpha
Helix 85	AJ4	C	379	404	Right-handed alpha
Helix 86	AJ5	C	405	410	Right-handed alpha
Helix 87	AJ6	C	414	423	Right-handed alpha
Helix 88	AJ7	C	424	445	Right-handed alpha
Helix 89	AJ8	C	450	464	Right-handed alpha
Helix 90	AJ9	C	465	472	Right-handed 310
Helix 91	AK1	C	477	487	Right-handed alpha
Helix 92	AK2	C	488	512	Right-handed alpha
Helix 93	AK3	C	525	538	Right-handed alpha
Helix 94	AK4	C	552	566	Right-handed alpha
Helix 95	AK5	C	568	588	Right-handed alpha
Helix 96	AK6	C	588	608	Right-handed alpha
Helix 97	AK7	D	25	47	Right-handed alpha
Helix 98	AK8	D	47	55	Right-handed alpha
Helix 99	AK9	D	57	65	Right-handed alpha
Helix 100	AL1	D	81	89	Right-handed alpha
Helix 101	AL2	D	91	102	Right-handed alpha
Helix 102	AL3	D	103	108	Right-handed 310
Helix 103	AL4	D	112	116	Right-handed 310
Helix 104	AL5	D	119	127	Right-handed alpha
Helix 105	AL6	D	129	139	Right-handed alpha
Helix 106	AL7	D	165	173	Right-handed alpha
Helix 107	AL8	D	175	184	Right-handed alpha
Helix 108	AL9	D	198	205	Right-handed alpha
Helix 109	AM1	D	208	221	Right-handed alpha
Helix 110	AM2	D	242	250	Right-handed alpha
Helix 111	AM3	D	252	260	Right-handed alpha
Helix 112	AM4	D	291	298	Right-handed alpha
Helix 113	AM5	D	303	310	Right-handed 310
Helix 114	AM6	D	312	324	Right-handed alpha
Helix 115	AM7	D	324	349	Right-handed alpha
Helix 116	AM8	D	372	377	Right-handed alpha
Helix 117	AM9	D	379	404	Right-handed alpha
Helix 118	AN1	D	405	410	Right-handed alpha
Helix 119	AN2	D	414	423	Right-handed alpha
Helix 120	AN3	D	424	445	Right-handed alpha
Helix 121	AN4	D	450	464	Right-handed alpha
Helix 122	AN5	D	465	472	Right-handed 310
Helix 123	AN6	D	477	487	Right-handed alpha
Helix 124	AN7	D	488	512	Right-handed alpha
Helix 125	AN8	D	525	538	Right-handed alpha
Helix 126	AN9	D	552	566	Right-handed alpha
Helix 127	AO1	D	568	588	Right-handed alpha
Helix 128	AO2	D	588	608	Right-handed alpha

There are 8 sheets in PDB entry 7S88. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	270	first strand
Strand 2	A	273	278	anti-parallel
Strand 3	A	629	636	anti-parallel
Strand 4	A	618	619	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	354	first strand
Strand 2	A	368	370	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	270	first strand
Strand 2	B	273	278	anti-parallel
Strand 3	B	629	636	anti-parallel
Strand 4	B	618	619	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	354	first strand
Strand 2	B	368	370	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	270	first strand
Strand 2	C	273	278	anti-parallel
Strand 3	C	629	636	anti-parallel
Strand 4	C	618	619	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	354	first strand
Strand 2	C	368	370	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	270	first strand
Strand 2	D	273	278	anti-parallel
Strand 3	D	629	636	anti-parallel
Strand 4	D	618	619	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	354	first strand
Strand 2	D	368	370	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7S88

Analysis of interatomic Contacts of Structural Units in PDB entry:
7S88