Analysis of interatomic Contacts of Structural Units in PDB entry:
7S8B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7S8B entry

There are 4 chains in PDB entry 7S8B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 27	ASP 638
B	GLU 27	ASP 638
C	GLU 27	ASP 638
D	GLU 27	ASP 638

There are124 helices in PDB entry 7S8B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	43	Right-handed alpha
Helix 2	AA2	A	58	67	Right-handed alpha
Helix 3	AA3	A	81	89	Right-handed alpha
Helix 4	AA4	A	93	102	Right-handed alpha
Helix 5	AA5	A	103	106	Right-handed 310
Helix 6	AA6	A	119	127	Right-handed alpha
Helix 7	AA7	A	130	137	Right-handed alpha
Helix 8	AA8	A	138	140	Right-handed 310
Helix 9	AA9	A	149	153	Right-handed 310
Helix 10	AB1	A	165	173	Right-handed alpha
Helix 11	AB2	A	175	184	Right-handed alpha
Helix 12	AB3	A	198	205	Right-handed alpha
Helix 13	AB4	A	208	221	Right-handed alpha
Helix 14	AB5	A	231	235	Right-handed 310
Helix 15	AB6	A	242	251	Right-handed alpha
Helix 16	AB7	A	252	261	Right-handed alpha
Helix 17	AB8	A	291	298	Right-handed alpha
Helix 18	AB9	A	302	310	Right-handed 310
Helix 19	AC1	A	312	324	Right-handed alpha
Helix 20	AC2	A	324	349	Right-handed alpha
Helix 21	AC3	A	379	402	Right-handed alpha
Helix 22	AC4	A	414	419	Right-handed alpha
Helix 23	AC5	A	424	445	Right-handed alpha
Helix 24	AC6	A	450	464	Right-handed alpha
Helix 25	AC7	A	465	472	Right-handed 310
Helix 26	AC8	A	475	487	Right-handed alpha
Helix 27	AC9	A	488	512	Right-handed alpha
Helix 28	AD1	A	513	515	Right-handed 310
Helix 29	AD2	A	525	538	Right-handed alpha
Helix 30	AD3	A	552	582	Right-handed alpha
Helix 31	AD4	A	588	607	Right-handed alpha
Helix 32	AD5	B	28	43	Right-handed alpha
Helix 33	AD6	B	58	67	Right-handed alpha
Helix 34	AD7	B	81	89	Right-handed alpha
Helix 35	AD8	B	93	102	Right-handed alpha
Helix 36	AD9	B	103	106	Right-handed 310
Helix 37	AE1	B	119	127	Right-handed alpha
Helix 38	AE2	B	130	137	Right-handed alpha
Helix 39	AE3	B	138	140	Right-handed 310
Helix 40	AE4	B	149	153	Right-handed 310
Helix 41	AE5	B	165	173	Right-handed alpha
Helix 42	AE6	B	175	184	Right-handed alpha
Helix 43	AE7	B	198	205	Right-handed alpha
Helix 44	AE8	B	208	221	Right-handed alpha
Helix 45	AE9	B	231	235	Right-handed 310
Helix 46	AF1	B	242	251	Right-handed alpha
Helix 47	AF2	B	252	261	Right-handed alpha
Helix 48	AF3	B	291	298	Right-handed alpha
Helix 49	AF4	B	302	310	Right-handed 310
Helix 50	AF5	B	312	324	Right-handed alpha
Helix 51	AF6	B	324	349	Right-handed alpha
Helix 52	AF7	B	379	402	Right-handed alpha
Helix 53	AF8	B	414	419	Right-handed alpha
Helix 54	AF9	B	424	445	Right-handed alpha
Helix 55	AG1	B	450	464	Right-handed alpha
Helix 56	AG2	B	465	472	Right-handed 310
Helix 57	AG3	B	475	487	Right-handed alpha
Helix 58	AG4	B	488	512	Right-handed alpha
Helix 59	AG5	B	513	515	Right-handed 310
Helix 60	AG6	B	525	538	Right-handed alpha
Helix 61	AG7	B	552	582	Right-handed alpha
Helix 62	AG8	B	588	607	Right-handed alpha
Helix 63	AG9	C	28	43	Right-handed alpha
Helix 64	AH1	C	58	67	Right-handed alpha
Helix 65	AH2	C	81	89	Right-handed alpha
Helix 66	AH3	C	93	102	Right-handed alpha
Helix 67	AH4	C	103	106	Right-handed 310
Helix 68	AH5	C	119	127	Right-handed alpha
Helix 69	AH6	C	130	137	Right-handed alpha
Helix 70	AH7	C	138	140	Right-handed 310
Helix 71	AH8	C	149	153	Right-handed 310
Helix 72	AH9	C	165	173	Right-handed alpha
Helix 73	AI1	C	175	184	Right-handed alpha
Helix 74	AI2	C	198	205	Right-handed alpha
Helix 75	AI3	C	208	221	Right-handed alpha
Helix 76	AI4	C	231	235	Right-handed 310
Helix 77	AI5	C	242	251	Right-handed alpha
Helix 78	AI6	C	252	261	Right-handed alpha
Helix 79	AI7	C	291	298	Right-handed alpha
Helix 80	AI8	C	302	310	Right-handed 310
Helix 81	AI9	C	312	324	Right-handed alpha
Helix 82	AJ1	C	324	349	Right-handed alpha
Helix 83	AJ2	C	379	402	Right-handed alpha
Helix 84	AJ3	C	414	419	Right-handed alpha
Helix 85	AJ4	C	424	445	Right-handed alpha
Helix 86	AJ5	C	450	464	Right-handed alpha
Helix 87	AJ6	C	465	472	Right-handed 310
Helix 88	AJ7	C	475	487	Right-handed alpha
Helix 89	AJ8	C	488	512	Right-handed alpha
Helix 90	AJ9	C	513	515	Right-handed 310
Helix 91	AK1	C	525	538	Right-handed alpha
Helix 92	AK2	C	552	582	Right-handed alpha
Helix 93	AK3	C	588	607	Right-handed alpha
Helix 94	AK4	D	28	43	Right-handed alpha
Helix 95	AK5	D	58	67	Right-handed alpha
Helix 96	AK6	D	81	89	Right-handed alpha
Helix 97	AK7	D	93	102	Right-handed alpha
Helix 98	AK8	D	103	106	Right-handed 310
Helix 99	AK9	D	119	127	Right-handed alpha
Helix 100	AL1	D	130	137	Right-handed alpha
Helix 101	AL2	D	138	140	Right-handed 310
Helix 102	AL3	D	149	153	Right-handed 310
Helix 103	AL4	D	165	173	Right-handed alpha
Helix 104	AL5	D	175	184	Right-handed alpha
Helix 105	AL6	D	198	205	Right-handed alpha
Helix 106	AL7	D	208	221	Right-handed alpha
Helix 107	AL8	D	231	235	Right-handed 310
Helix 108	AL9	D	242	251	Right-handed alpha
Helix 109	AM1	D	252	261	Right-handed alpha
Helix 110	AM2	D	291	298	Right-handed alpha
Helix 111	AM3	D	302	310	Right-handed 310
Helix 112	AM4	D	312	324	Right-handed alpha
Helix 113	AM5	D	324	349	Right-handed alpha
Helix 114	AM6	D	379	402	Right-handed alpha
Helix 115	AM7	D	414	419	Right-handed alpha
Helix 116	AM8	D	424	445	Right-handed alpha
Helix 117	AM9	D	450	464	Right-handed alpha
Helix 118	AN1	D	465	472	Right-handed 310
Helix 119	AN2	D	475	487	Right-handed alpha
Helix 120	AN3	D	488	512	Right-handed alpha
Helix 121	AN4	D	513	515	Right-handed 310
Helix 122	AN5	D	525	538	Right-handed alpha
Helix 123	AN6	D	552	582	Right-handed alpha
Helix 124	AN7	D	588	607	Right-handed alpha

There are 8 sheets in PDB entry 7S8B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	270	first strand
Strand 2	A	273	278	anti-parallel
Strand 3	A	629	636	anti-parallel
Strand 4	A	618	619	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	354	first strand
Strand 2	A	368	370	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	270	first strand
Strand 2	B	273	278	anti-parallel
Strand 3	B	629	636	anti-parallel
Strand 4	B	618	619	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	354	first strand
Strand 2	B	368	370	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	270	first strand
Strand 2	C	273	278	anti-parallel
Strand 3	C	629	636	anti-parallel
Strand 4	C	618	619	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	354	first strand
Strand 2	C	368	370	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	270	first strand
Strand 2	D	273	278	anti-parallel
Strand 3	D	629	636	anti-parallel
Strand 4	D	618	619	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	354	first strand
Strand 2	D	368	370	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7S8B

Analysis of interatomic Contacts of Structural Units in PDB entry:
7S8B