Analysis of interatomic Contacts of Structural Units in PDB entry:
7S8H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7S8H entry

There are 6 chains in PDB entry 7S8H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 59	SER 255
H	ASP 1	LYS 224
L	ASP 1	GLY 214
B	GLN 2	LYS 226
C	GLU 2	GLU 216
a	GLY 260	ARG 422

There are 35 helices in PDB entry 7S8H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	79	Right-handed 310
Helix 2	AA2	A	119	127	Right-handed alpha
Helix 3	AA3	A	130	143	Right-handed alpha
Helix 4	AA4	A	149	151	Right-handed 310
Helix 5	AA5	A	157	161	Right-handed 310
Helix 6	AA6	A	169	171	Right-handed 310
Helix 7	AA7	A	182	195	Right-handed alpha
Helix 8	AA8	A	198	202	Right-handed 310
Helix 9	AA9	A	238	245	Right-handed alpha
Helix 10	AB1	A	246	248	Right-handed 310
Helix 11	AB2	H	29	33	Right-handed 310
Helix 12	AB3	H	63	66	Right-handed 310
Helix 13	AB4	H	88	92	Right-handed 310
Helix 14	AB5	H	166	168	Right-handed 310
Helix 15	AB6	H	197	202	Right-handed alpha
Helix 16	AB7	H	211	214	Right-handed 310
Helix 17	AB8	L	30	32	Right-handed 310
Helix 18	AB9	L	80	84	Right-handed 310
Helix 19	AC1	L	123	130	Right-handed alpha
Helix 20	AC2	L	185	191	Right-handed alpha
Helix 21	AC3	B	62	65	Right-handed 310
Helix 22	AC4	B	87	91	Right-handed 310
Helix 23	AC5	B	212	216	Right-handed 310
Helix 24	AC6	C	30	33	Right-handed 310
Helix 25	AC7	C	81	85	Right-handed 310
Helix 26	AC8	C	124	130	Right-handed alpha
Helix 27	AC9	C	186	192	Right-handed alpha
Helix 28	AD1	a	281	285	Right-handed 310
Helix 29	AD2	a	294	299	Right-handed alpha
Helix 30	AD3	a	300	303	Right-handed 310
Helix 31	AD4	a	307	326	Right-handed alpha
Helix 32	AD5	a	334	345	Right-handed alpha
Helix 33	AD6	a	346	359	Right-handed alpha
Helix 34	AD7	a	395	398	Right-handed 310
Helix 35	AD8	a	399	421	Right-handed alpha

There are 25 sheets in PDB entry 7S8H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	66	72	anti-parallel
Strand 3	a	368	374	anti-parallel
Strand 4	a	384	385	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	87	first strand
Strand 2	A	92	97	anti-parallel
Strand 3	A	101	108	anti-parallel
Strand 4	A	219	226	anti-parallel
Strand 5	A	163	167	anti-parallel
Strand 6	A	153	155	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	8	first strand
Strand 2	H	19	26	anti-parallel
Strand 3	H	79	84	anti-parallel
Strand 4	H	69	74	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	13	first strand
Strand 2	H	117	121	parallel
Strand 3	H	93	100	anti-parallel
Strand 4	H	34	40	anti-parallel
Strand 5	H	47	52	anti-parallel
Strand 6	H	59	61	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	130	134	first strand
Strand 2	H	145	155	anti-parallel
Strand 3	H	186	195	anti-parallel
Strand 4	H	173	175	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	130	134	first strand
Strand 2	H	145	155	anti-parallel
Strand 3	H	186	195	anti-parallel
Strand 4	H	179	180	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	161	164	first strand
Strand 2	H	204	210	anti-parallel
Strand 3	H	215	221	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	104	108	parallel
Strand 3	L	86	92	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	104	108	parallel
Strand 3	L	86	92	anti-parallel
Strand 4	L	98	100	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	116	120	first strand
Strand 2	L	131	141	anti-parallel
Strand 3	L	175	184	anti-parallel
Strand 4	L	161	165	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	147	152	first strand
Strand 2	L	193	199	anti-parallel
Strand 3	L	207	212	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	9	first strand
Strand 2	B	19	26	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	71	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	119	123	parallel
Strand 3	B	92	100	anti-parallel
Strand 4	B	33	41	anti-parallel
Strand 5	B	45	53	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	119	123	parallel
Strand 3	B	92	100	anti-parallel
Strand 4	B	114	115	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	136	first strand
Strand 2	B	149	157	anti-parallel
Strand 3	B	188	195	anti-parallel
Strand 4	B	175	177	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	136	first strand
Strand 2	B	149	157	anti-parallel
Strand 3	B	188	195	anti-parallel
Strand 4	B	181	182	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	166	first strand
Strand 2	B	207	211	anti-parallel
Strand 3	B	220	222	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	20	26	anti-parallel
Strand 3	C	72	77	anti-parallel
Strand 4	C	64	69	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	105	109	parallel
Strand 3	C	87	92	anti-parallel
Strand 4	C	35	40	anti-parallel
Strand 5	C	47	51	anti-parallel
Strand 6	C	55	56	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	105	109	parallel
Strand 3	C	87	92	anti-parallel
Strand 4	C	100	101	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	121	first strand
Strand 2	C	132	142	anti-parallel
Strand 3	C	176	185	anti-parallel
Strand 4	C	162	166	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	157	first strand
Strand 2	C	148	153	anti-parallel
Strand 3	C	194	200	anti-parallel
Strand 4	C	208	213	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	278	280	first strand
Strand 2	a	291	293	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	388	389	first strand
Strand 2	a	392	393	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7S8H

Analysis of interatomic Contacts of Structural Units in PDB entry:
7S8H