Analysis of interatomic Contacts of Structural Units in PDB entry:
7S8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7S8J entry

There are 2 chains in PDB entry 7S8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0PRO 202
B
 GLN 1ASP 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 7S8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
79 83Right-handed 310
Helix 2
AA2
A
183 188Right-handed alpha
Helix 3
AA3
B
80 84Right-handed 310
Helix 4
AA4
B
113 117Right-handed 310
Helix 5
AA5
B
128 136Right-handed alpha
Helix 6
AA6
B
195 200Right-handed alpha
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There are 10 sheets in PDB entry 7S8J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
18 23anti-parallel
Strand 3
A
70 75anti-parallel
Strand 4
A
60 64anti-parallel
Strand 5
A
54 57anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
105 110parallel
Strand 3
A
84 90anti-parallel
Strand 4
A
31 36anti-parallel
Strand 5
A
43 48anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
105 110parallel
Strand 3
A
84 90anti-parallel
Strand 4
A
100 101anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 122first strand
Strand 2
A
132 137anti-parallel
Strand 3
A
172 177anti-parallel
Strand 4
A
153 155anti-parallel
Strand 5
A
148 150anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
B
167 169anti-parallel
Strand 3
B
185 194anti-parallel
Strand 4
B
137 147anti-parallel
Strand 5
B
121 125anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
B
167 169anti-parallel
Strand 3
B
185 194anti-parallel
Strand 4
B
174 175anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
17 23anti-parallel
Strand 3
B
74 76anti-parallel
Strand 4
B
63 64anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
106 111parallel
Strand 3
B
85 92anti-parallel
Strand 4
B
30 35anti-parallel
Strand 5
B
41 49anti-parallel
Strand 6
B
52 55anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
106 111parallel
Strand 3
B
85 92anti-parallel
Strand 4
B
100 102anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 163first strand
Strand 2
B
152 158anti-parallel
Strand 3
B
204 211anti-parallel
Strand 4
B
230 237anti-parallel
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