Analysis of interatomic Contacts of Structural Units in PDB entry:
7S8V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7S8V entry

There are 2 chains in PDB entry 7S8V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 578	LYS 897
B	HIS 1	ASP 922

There are 12 helices in PDB entry 7S8V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	625	629	Right-handed 310
Helix 2	AA2	A	644	649	Right-handed 310
Helix 3	AA3	A	676	684	Right-handed alpha
Helix 4	AA4	A	686	698	Right-handed alpha
Helix 5	AA5	A	852	857	Right-handed alpha
Helix 6	AA6	B	18	24	Right-handed 310
Helix 7	AA7	B	42	47	Right-handed alpha
Helix 8	AA8	B	149	153	Right-handed alpha
Helix 9	AA9	B	193	197	Right-handed 310
Helix 10	AB1	B	255	270	Right-handed alpha
Helix 11	AB2	B	638	643	Right-handed 310
Helix 12	AB3	B	874	881	Right-handed alpha

There are 17 sheets in PDB entry 7S8V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	590	first strand
Strand 2	A	597	602	anti-parallel
Strand 3	A	757	760	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	747	752	first strand
Strand 2	A	611	620	anti-parallel
Strand 3	A	768	777	anti-parallel
Strand 4	A	789	794	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	809	813	first strand
Strand 2	A	817	821	anti-parallel
Strand 3	A	860	863	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	846	851	first strand
Strand 2	A	834	840	anti-parallel
Strand 3	A	870	879	anti-parallel
Strand 4	A	882	883	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	846	851	first strand
Strand 2	A	834	840	anti-parallel
Strand 3	A	870	879	anti-parallel
Strand 4	A	890	893	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	14	first strand
Strand 2	B	26	38	parallel
Strand 3	B	56	57	parallel
Strand 4	B	81	82	parallel
Strand 5	B	111	112	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	14	first strand
Strand 2	B	26	38	parallel
Strand 3	B	61	66	parallel
Strand 4	B	91	96	parallel
Strand 5	B	116	122	parallel
Strand 6	B	143	148	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	173	first strand
Strand 2	B	178	180	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	184	first strand
Strand 2	B	187	188	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	233	first strand
Strand 2	B	236	237	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	246	248	anti-parallel
Strand 3	B	283	285	parallel
Strand 4	B	278	280	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	294	first strand
Strand 2	B	301	302	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	599	604	first strand
Strand 2	B	610	616	anti-parallel
Strand 3	B	779	783	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	771	774	first strand
Strand 2	B	627	634	anti-parallel
Strand 3	B	790	798	anti-parallel
Strand 4	B	813	816	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	827	832	first strand
Strand 2	B	840	845	anti-parallel
Strand 3	B	884	886	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	869	873	first strand
Strand 2	B	854	863	anti-parallel
Strand 3	B	894	902	anti-parallel
Strand 4	B	905	909	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	869	873	first strand
Strand 2	B	854	863	anti-parallel
Strand 3	B	894	902	anti-parallel
Strand 4	B	913	915	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7S8V

Analysis of interatomic Contacts of Structural Units in PDB entry:
7S8V