Analysis of interatomic Contacts of Structural Units in PDB entry:
7S8W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7S8W entry

There are 4 chains in PDB entry 7S8W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 367
B	MET 1	GLY 367
C	MET 1	SER 368
D	MET 1	SER 368

There are 66 helices in PDB entry 7S8W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	70	Right-handed alpha
Helix 2	AA2	A	70	77	Right-handed alpha
Helix 3	AA3	A	82	90	Right-handed alpha
Helix 4	AA4	A	96	115	Right-handed alpha
Helix 5	AA5	A	118	124	Right-handed alpha
Helix 6	AA6	A	141	155	Right-handed alpha
Helix 7	AA7	A	169	181	Right-handed alpha
Helix 8	AA8	A	195	197	Right-handed 310
Helix 9	AA9	A	198	204	Right-handed alpha
Helix 10	AB1	A	205	209	Right-handed 310
Helix 11	AB2	A	221	232	Right-handed alpha
Helix 12	AB3	A	244	254	Right-handed alpha
Helix 13	AB4	A	263	268	Right-handed alpha
Helix 14	AB5	A	269	283	Right-handed alpha
Helix 15	AB6	A	295	307	Right-handed alpha
Helix 16	AB7	A	319	323	Right-handed 310
Helix 17	AB8	A	352	359	Right-handed alpha
Helix 18	AB9	B	59	70	Right-handed alpha
Helix 19	AC1	B	70	77	Right-handed alpha
Helix 20	AC2	B	82	90	Right-handed alpha
Helix 21	AC3	B	96	115	Right-handed alpha
Helix 22	AC4	B	118	124	Right-handed alpha
Helix 23	AC5	B	141	155	Right-handed alpha
Helix 24	AC6	B	169	181	Right-handed alpha
Helix 25	AC7	B	195	197	Right-handed 310
Helix 26	AC8	B	198	204	Right-handed alpha
Helix 27	AC9	B	205	209	Right-handed 310
Helix 28	AD1	B	221	232	Right-handed alpha
Helix 29	AD2	B	244	254	Right-handed alpha
Helix 30	AD3	B	269	283	Right-handed alpha
Helix 31	AD4	B	295	307	Right-handed alpha
Helix 32	AD5	B	319	323	Right-handed 310
Helix 33	AD6	B	352	359	Right-handed alpha
Helix 34	AD7	C	59	70	Right-handed alpha
Helix 35	AD8	C	70	77	Right-handed alpha
Helix 36	AD9	C	82	90	Right-handed alpha
Helix 37	AE1	C	96	115	Right-handed alpha
Helix 38	AE2	C	118	124	Right-handed alpha
Helix 39	AE3	C	141	155	Right-handed alpha
Helix 40	AE4	C	169	181	Right-handed alpha
Helix 41	AE5	C	195	197	Right-handed 310
Helix 42	AE6	C	198	204	Right-handed alpha
Helix 43	AE7	C	205	209	Right-handed 310
Helix 44	AE8	C	221	232	Right-handed alpha
Helix 45	AE9	C	244	254	Right-handed alpha
Helix 46	AF1	C	263	268	Right-handed alpha
Helix 47	AF2	C	269	283	Right-handed alpha
Helix 48	AF3	C	295	307	Right-handed alpha
Helix 49	AF4	C	319	323	Right-handed 310
Helix 50	AF5	C	352	359	Right-handed alpha
Helix 51	AF6	D	59	70	Right-handed alpha
Helix 52	AF7	D	70	77	Right-handed alpha
Helix 53	AF8	D	82	90	Right-handed alpha
Helix 54	AF9	D	96	115	Right-handed alpha
Helix 55	AG1	D	118	124	Right-handed alpha
Helix 56	AG2	D	141	155	Right-handed alpha
Helix 57	AG3	D	169	181	Right-handed alpha
Helix 58	AG4	D	195	197	Right-handed 310
Helix 59	AG5	D	198	204	Right-handed alpha
Helix 60	AG6	D	205	209	Right-handed 310
Helix 61	AG7	D	221	232	Right-handed alpha
Helix 62	AG8	D	244	254	Right-handed alpha
Helix 63	AG9	D	269	283	Right-handed alpha
Helix 64	AH1	D	295	307	Right-handed alpha
Helix 65	AH2	D	319	323	Right-handed 310
Helix 66	AH3	D	352	359	Right-handed alpha

There are 12 sheets in PDB entry 7S8W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	47	first strand
Strand 2	A	24	38	anti-parallel
Strand 3	A	5	21	anti-parallel
Strand 4	A	360	366	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	131	first strand
Strand 2	A	338	340	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	136	first strand
Strand 2	A	159	163	parallel
Strand 3	A	185	189	parallel
Strand 4	A	213	214	parallel
Strand 5	A	236	238	parallel
Strand 6	A	259	262	parallel
Strand 7	A	287	289	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	47	first strand
Strand 2	B	24	38	anti-parallel
Strand 3	B	5	21	anti-parallel
Strand 4	B	360	366	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	131	first strand
Strand 2	B	338	340	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	136	first strand
Strand 2	B	160	163	parallel
Strand 3	B	186	189	parallel
Strand 4	B	213	214	parallel
Strand 5	B	236	238	parallel
Strand 6	B	259	262	parallel
Strand 7	B	287	289	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	47	first strand
Strand 2	C	24	37	anti-parallel
Strand 3	C	5	21	anti-parallel
Strand 4	C	360	367	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	131	first strand
Strand 2	C	338	340	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	136	first strand
Strand 2	C	159	163	parallel
Strand 3	C	185	189	parallel
Strand 4	C	213	214	parallel
Strand 5	C	236	238	parallel
Strand 6	C	259	262	parallel
Strand 7	C	287	289	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	47	first strand
Strand 2	D	24	38	anti-parallel
Strand 3	D	5	21	anti-parallel
Strand 4	D	360	366	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	131	first strand
Strand 2	D	338	340	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	136	first strand
Strand 2	D	160	163	parallel
Strand 3	D	186	189	parallel
Strand 4	D	213	214	parallel
Strand 5	D	236	238	parallel
Strand 6	D	259	262	parallel
Strand 7	D	287	289	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7S8W

Analysis of interatomic Contacts of Structural Units in PDB entry:
7S8W