Analysis of interatomic Contacts of Structural Units in PDB entry:
7S9E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7S9E entry

There are 2 chains in PDB entry 7S9E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 13GLN 722
B
 THR 13GLN 722
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 7S9E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 31Right-handed alpha
Helix 2
AA2
A
44 48Right-handed 310
Helix 3
AA3
A
53 64Right-handed alpha
Helix 4
AA4
A
66 71Right-handed alpha
Helix 5
AA5
A
78 104Right-handed alpha
Helix 6
AA6
A
109 127Right-handed alpha
Helix 7
AA7
A
137 152Right-handed alpha
Helix 8
AA8
A
168 196Right-handed alpha
Helix 9
AA9
A
197 204Right-handed 310
Helix 10
AB1
A
206 230Right-handed alpha
Helix 11
AB2
A
241 253Right-handed alpha
Helix 12
AB3
A
258 282Right-handed alpha
Helix 13
AB4
A
291 308Right-handed alpha
Helix 14
AB5
A
309 314Right-handed alpha
Helix 15
AB6
A
335 338Right-handed 310
Helix 16
AB7
A
339 365Right-handed alpha
Helix 17
AB8
A
370 388Right-handed alpha
Helix 18
AB9
A
396 407Right-handed alpha
Helix 19
AC1
A
411 427Right-handed alpha
Helix 20
AC2
A
436 448Right-handed alpha
Helix 21
AC3
A
448 454Right-handed alpha
Helix 22
AC4
A
456 465Right-handed alpha
Helix 23
AC5
A
465 481Right-handed alpha
Helix 24
AC6
A
484 502Right-handed alpha
Helix 25
AC7
A
524 526Right-handed 310
Helix 26
AC8
A
549 560Right-handed alpha
Helix 27
AC9
A
563 579Right-handed alpha
Helix 28
AD1
A
653 671Right-handed alpha
Helix 29
AD2
A
680 690Right-handed alpha
Helix 30
AD3
A
697 701Right-handed 310
Helix 31
AD4
A
705 721Right-handed alpha
Helix 32
AD5
B
24 31Right-handed alpha
Helix 33
AD6
B
44 48Right-handed 310
Helix 34
AD7
B
53 64Right-handed alpha
Helix 35
AD8
B
66 71Right-handed alpha
Helix 36
AD9
B
78 104Right-handed alpha
Helix 37
AE1
B
109 127Right-handed alpha
Helix 38
AE2
B
137 152Right-handed alpha
Helix 39
AE3
B
168 196Right-handed alpha
Helix 40
AE4
B
197 204Right-handed 310
Helix 41
AE5
B
206 230Right-handed alpha
Helix 42
AE6
B
241 253Right-handed alpha
Helix 43
AE7
B
258 282Right-handed alpha
Helix 44
AE8
B
291 308Right-handed alpha
Helix 45
AE9
B
309 314Right-handed alpha
Helix 46
AF1
B
335 338Right-handed 310
Helix 47
AF2
B
339 365Right-handed alpha
Helix 48
AF3
B
370 388Right-handed alpha
Helix 49
AF4
B
396 407Right-handed alpha
Helix 50
AF5
B
411 427Right-handed alpha
Helix 51
AF6
B
436 448Right-handed alpha
Helix 52
AF7
B
448 454Right-handed alpha
Helix 53
AF8
B
456 465Right-handed alpha
Helix 54
AF9
B
465 481Right-handed alpha
Helix 55
AG1
B
484 502Right-handed alpha
Helix 56
AG2
B
524 526Right-handed 310
Helix 57
AG3
B
549 560Right-handed alpha
Helix 58
AG4
B
563 579Right-handed alpha
Helix 59
AG5
B
653 671Right-handed alpha
Helix 60
AG6
B
680 690Right-handed alpha
Helix 61
AG7
B
697 701Right-handed 310
Helix 62
AG8
B
705 721Right-handed alpha
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There are 4 sheets in PDB entry 7S9E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
394 395anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 522first strand
Strand 2
A
509 513anti-parallel
Strand 3
A
535 539anti-parallel
Strand 4
A
641 645parallel
Strand 5
A
673 677parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 135first strand
Strand 2
B
394 395anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
520 522first strand
Strand 2
B
509 513anti-parallel
Strand 3
B
535 539anti-parallel
Strand 4
B
641 645parallel
Strand 5
B
673 677parallel
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