Analysis of interatomic Contacts of Structural Units in PDB entry:
7S9Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7S9Y entry

There is 1 chain in PDB entry 7S9Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 942
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 7S9Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 36Right-handed alpha
Helix 2
AA2
A
37 43Right-handed alpha
Helix 3
AA3
A
48 69Right-handed alpha
Helix 4
AA4
A
76 100Right-handed alpha
Helix 5
AA5
A
306 327Right-handed alpha
Helix 6
AA6
A
329 342Right-handed alpha
Helix 7
AA7
A
389 396Right-handed alpha
Helix 8
AA8
A
397 405Right-handed alpha
Helix 9
AA9
A
419 431Right-handed alpha
Helix 10
AB1
A
440 451Right-handed alpha
Helix 11
AB2
A
451 456Right-handed alpha
Helix 12
AB3
A
465 472Right-handed alpha
Helix 13
AB4
A
482 487Right-handed 310
Helix 14
AB5
A
495 503Right-handed alpha
Helix 15
AB6
A
511 533Right-handed alpha
Helix 16
AB7
A
551 562Right-handed alpha
Helix 17
AB8
A
564 588Right-handed alpha
Helix 18
AB9
A
591 609Right-handed alpha
Helix 19
AC1
A
615 628Right-handed alpha
Helix 20
AC2
A
629 634Right-handed alpha
Helix 21
AC3
A
634 655Right-handed alpha
Helix 22
AC4
A
660 690Right-handed alpha
Helix 23
AC5
A
698 714Right-handed alpha
Helix 24
AC6
A
719 738Right-handed alpha
Helix 25
AC7
A
750 756Right-handed 310
Helix 26
AC8
A
757 789Right-handed alpha
Helix 27
AC9
A
794 830Right-handed alpha
Helix 28
AD1
A
840 859Right-handed alpha
Helix 29
AD2
A
860 862Right-handed 310
Helix 30
AD3
A
866 878Right-handed alpha
Helix 31
AD4
A
878 892Right-handed alpha
Helix 32
AD5
A
908 926Right-handed alpha
Helix 33
AD6
A
927 929Right-handed 310
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There are 5 sheets in PDB entry 7S9Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 108first strand
Strand 2
A
296 302anti-parallel
Strand 3
A
283 290anti-parallel
Strand 4
A
278 280anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 117first strand
Strand 2
A
228 244anti-parallel
Strand 3
A
251 261anti-parallel
Strand 4
A
268 273anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 140first strand
Strand 2
A
122 128anti-parallel
Strand 3
A
219 225anti-parallel
Strand 4
A
211 213anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 156first strand
Strand 2
A
161 170anti-parallel
Strand 3
A
180 188anti-parallel
Strand 4
A
191 199anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 410first strand
Strand 2
A
416 418anti-parallel
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