Analysis of interatomic Contacts of Structural Units in PDB entry:
7SCI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SCI entry

There is 1 chain in PDB entry 7SCI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 20GLU 506
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 7SCI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 32Right-handed alpha
Helix 2
AA2
A
54 66Right-handed alpha
Helix 3
AA3
A
83 92Right-handed alpha
Helix 4
AA4
A
141 145Right-handed 310
Helix 5
AA5
A
204 206Right-handed 310
Helix 6
AA6
A
208 218Right-handed alpha
Helix 7
AA7
A
237 243Right-handed alpha
Helix 8
AA8
A
247 266Right-handed alpha
Helix 9
AA9
A
301 309Right-handed alpha
Helix 10
AB1
A
312 315Right-handed 310
Helix 11
AB2
A
316 332Right-handed alpha
Helix 12
AB3
A
333 337Right-handed 310
Helix 13
AB4
A
345 357Right-handed alpha
Helix 14
AB5
A
361 366Right-handed alpha
Helix 15
AB6
A
367 377Right-handed alpha
Helix 16
AB7
A
382 386Right-handed 310
Helix 17
AB8
A
388 406Right-handed alpha
Helix 18
AB9
A
410 423Right-handed alpha
Helix 19
AC1
A
427 431Right-handed 310
Helix 20
AC2
A
432 447Right-handed alpha
Helix 21
AC3
A
450 457Right-handed alpha
Helix 22
AC4
A
478 492Right-handed alpha
Helix 23
AC5
A
500 504Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 7SCI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 78first strand
Strand 2
A
188 192anti-parallel
Strand 3
A
111 117anti-parallel
Strand 4
A
161 167anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
178 179parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 157first strand
Strand 2
A
126 130anti-parallel
Strand 3
A
171 176anti-parallel
Strand 4
A
102 108anti-parallel
Strand 5
A
196 197anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
223 227parallel
Strand 3
A
231 236anti-parallel
Strand 4
A
279 284parallel
Strand 5
A
295 299parallel
Strand 6
A
289 292anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 468first strand
Strand 2
A
472 477anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il