Analysis of interatomic Contacts of Structural Units in PDB entry:
7SCJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7SCJ entry

There are 2 chains in PDB entry 7SCJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 92	VAL 727
B	ASP 82	VAL 699

There are 42 helices in PDB entry 7SCJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	105	111	Right-handed alpha
Helix 2	AA2	A	128	141	Right-handed alpha
Helix 3	AA3	A	173	180	Right-handed alpha
Helix 4	AA4	A	222	226	Right-handed 310
Helix 5	AA5	A	277	282	Right-handed alpha
Helix 6	AA6	A	303	308	Right-handed alpha
Helix 7	AA7	A	309	320	Right-handed alpha
Helix 8	AA8	A	323	330	Right-handed alpha
Helix 9	AA9	A	345	353	Right-handed alpha
Helix 10	AB1	A	388	396	Right-handed alpha
Helix 11	AB2	A	397	416	Right-handed alpha
Helix 12	AB3	A	418	432	Right-handed alpha
Helix 13	AB4	A	441	446	Right-handed alpha
Helix 14	AB5	A	461	465	Right-handed 310
Helix 15	AB6	A	571	585	Right-handed alpha
Helix 16	AB7	A	628	637	Right-handed alpha
Helix 17	AB8	A	639	649	Right-handed alpha
Helix 18	AB9	A	652	666	Right-handed alpha
Helix 19	AC1	A	699	713	Right-handed alpha
Helix 20	AC2	B	127	139	Right-handed alpha
Helix 21	AC3	B	166	176	Right-handed alpha
Helix 22	AC4	B	180	184	Right-handed 310
Helix 23	AC5	B	235	240	Right-handed alpha
Helix 24	AC6	B	262	277	Right-handed alpha
Helix 25	AC7	B	308	312	Right-handed alpha
Helix 26	AC8	B	313	315	Right-handed 310
Helix 27	AC9	B	329	338	Right-handed alpha
Helix 28	AD1	B	357	361	Right-handed 310
Helix 29	AD2	B	366	370	Right-handed 310
Helix 30	AD3	B	372	379	Right-handed alpha
Helix 31	AD4	B	381	399	Right-handed alpha
Helix 32	AD5	B	402	419	Right-handed alpha
Helix 33	AD6	B	420	423	Right-handed 310
Helix 34	AD7	B	425	430	Right-handed alpha
Helix 35	AD8	B	432	439	Right-handed alpha
Helix 36	AD9	B	467	478	Right-handed alpha
Helix 37	AE1	B	518	523	Right-handed 310
Helix 38	AE2	B	545	559	Right-handed alpha
Helix 39	AE3	B	602	610	Right-handed alpha
Helix 40	AE4	B	615	624	Right-handed alpha
Helix 41	AE5	B	627	640	Right-handed alpha
Helix 42	AE6	B	669	685	Right-handed alpha

There are 14 sheets in PDB entry 7SCJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	145	first strand
Strand 2	A	116	118	parallel
Strand 3	A	153	155	parallel
Strand 4	A	190	194	parallel
Strand 5	A	215	218	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	163	first strand
Strand 2	A	196	197	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	297	first strand
Strand 2	A	264	269	parallel
Strand 3	A	333	336	parallel
Strand 4	A	356	359	parallel
Strand 5	A	379	380	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	510	517	first strand
Strand 2	A	480	486	parallel
Strand 3	A	560	565	parallel
Strand 4	A	623	627	anti-parallel
Strand 5	A	590	591	anti-parallel
Strand 6	A	670	671	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	594	595	first strand
Strand 2	A	618	619	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	599	600	first strand
Strand 2	A	605	606	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	724	726	first strand
Strand 2	B	694	696	anti-parallel
Strand 3	B	644	646	parallel
Strand 4	B	564	565	parallel
Strand 5	B	598	601	anti-parallel
Strand 6	B	533	538	anti-parallel
Strand 7	B	456	462	parallel
Strand 8	B	482	489	parallel
Strand 9	B	509	513	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	108	first strand
Strand 2	B	152	154	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	189	first strand
Strand 2	B	211	214	parallel
Strand 3	B	228	229	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	218	first strand
Strand 2	B	348	349	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	257	first strand
Strand 2	B	280	283	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	301	first strand
Strand 2	B	304	307	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	320	first strand
Strand 2	B	340	343	parallel
Strand 3	B	363	364	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	570	574	first strand
Strand 2	B	579	583	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7SCJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7SCJ