Analysis of interatomic Contacts of Structural Units in PDB entry:
7SCK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SCK entry

There are 2 chains in PDB entry 7SCK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 90ARG 745
B
 ASP 82SER 717
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 45 helices in PDB entry 7SCK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
105 109Right-handed 310
Helix 2
AA2
A
128 140Right-handed alpha
Helix 3
AA3
A
174 180Right-handed alpha
Helix 4
AA4
A
222 226Right-handed 310
Helix 5
AA5
A
282 287Right-handed alpha
Helix 6
AA6
A
309 320Right-handed alpha
Helix 7
AA7
A
323 329Right-handed alpha
Helix 8
AA8
A
345 353Right-handed alpha
Helix 9
AA9
A
388 395Right-handed alpha
Helix 10
AB1
A
397 415Right-handed alpha
Helix 11
AB2
A
418 432Right-handed alpha
Helix 12
AB3
A
441 446Right-handed alpha
Helix 13
AB4
A
461 465Right-handed 310
Helix 14
AB5
A
495 506Right-handed alpha
Helix 15
AB6
A
525 529Right-handed 310
Helix 16
AB7
A
545 551Right-handed 310
Helix 17
AB8
A
571 583Right-handed alpha
Helix 18
AB9
A
628 637Right-handed alpha
Helix 19
AC1
A
639 650Right-handed alpha
Helix 20
AC2
A
652 666Right-handed alpha
Helix 21
AC3
A
696 713Right-handed alpha
Helix 22
AC4
A
740 744Right-handed 310
Helix 23
AC5
B
86 91Right-handed alpha
Helix 24
AC6
B
127 139Right-handed alpha
Helix 25
AC7
B
166 177Right-handed alpha
Helix 26
AC8
B
180 184Right-handed 310
Helix 27
AC9
B
235 240Right-handed alpha
Helix 28
AD1
B
262 277Right-handed alpha
Helix 29
AD2
B
308 312Right-handed alpha
Helix 30
AD3
B
329 338Right-handed alpha
Helix 31
AD4
B
357 361Right-handed 310
Helix 32
AD5
B
367 371Right-handed 310
Helix 33
AD6
B
372 379Right-handed alpha
Helix 34
AD7
B
381 399Right-handed alpha
Helix 35
AD8
B
402 419Right-handed alpha
Helix 36
AD9
B
420 423Right-handed 310
Helix 37
AE1
B
426 431Right-handed alpha
Helix 38
AE2
B
432 439Right-handed alpha
Helix 39
AE3
B
465 477Right-handed alpha
Helix 40
AE4
B
518 524Right-handed 310
Helix 41
AE5
B
545 559Right-handed alpha
Helix 42
AE6
B
602 612Right-handed alpha
Helix 43
AE7
B
615 624Right-handed alpha
Helix 44
AE8
B
626 640Right-handed alpha
Helix 45
AE9
B
669 685Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 7SCK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
116 118parallel
Strand 3
A
154 155parallel
Strand 4
A
190 194parallel
Strand 5
A
215 218parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 297first strand
Strand 2
A
262 269parallel
Strand 3
A
331 336parallel
Strand 4
A
356 359parallel
Strand 5
A
379 380parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 540first strand
Strand 2
A
510 517parallel
Strand 3
A
480 486parallel
Strand 4
A
560 565parallel
Strand 5
A
623 627anti-parallel
Strand 6
A
590 591anti-parallel
Strand 7
A
670 671parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
605 609first strand
Strand 2
A
594 600anti-parallel
Strand 3
A
618 619anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
722 725first strand
Strand 2
B
695 698anti-parallel
Strand 3
B
644 646parallel
Strand 4
B
563 565parallel
Strand 5
B
597 601anti-parallel
Strand 6
B
533 538anti-parallel
Strand 7
B
456 462parallel
Strand 8
B
482 489parallel
Strand 9
B
509 513parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 108first strand
Strand 2
B
152 154parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 189first strand
Strand 2
B
211 214parallel
Strand 3
B
228 229parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
280 283first strand
Strand 2
B
252 257parallel
Strand 3
B
315 320parallel
Strand 4
B
340 343parallel
Strand 5
B
363 364parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 300first strand
Strand 2
B
305 307anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
570 574first strand
Strand 2
B
579 583anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il