Analysis of interatomic Contacts of Structural Units in PDB entry:
7SD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SD0 entry

There are 3 chains in PDB entry 7SD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 63ARG 579
B
 ALA 5GLN 178
C
 LEU 7PRO 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 7SD0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
87 101Right-handed alpha
Helix 2
AA2
A
116 122Right-handed 310
Helix 3
AA3
A
141 145Right-handed 310
Helix 4
AA4
A
162 168Right-handed 310
Helix 5
AA5
A
187 191Right-handed 310
Helix 6
AA6
A
231 237Right-handed 310
Helix 7
AA7
A
254 260Right-handed 310
Helix 8
AA8
A
277 283Right-handed 310
Helix 9
AA9
A
300 306Right-handed 310
Helix 10
AB1
A
324 329Right-handed alpha
Helix 11
AB2
A
350 355Right-handed 310
Helix 12
AB3
A
395 401Right-handed 310
Helix 13
AB4
A
418 424Right-handed 310
Helix 14
AB5
A
441 447Right-handed 310
Helix 15
AB6
A
464 469Right-handed 310
Helix 16
AB7
A
510 516Right-handed 310
Helix 17
AB8
A
535 540Right-handed 310
Helix 18
AB9
A
557 564Right-handed alpha
Helix 19
AC1
A
564 574Right-handed alpha
Helix 20
AC2
B
25 36Right-handed alpha
Helix 21
AC3
B
74 76Right-handed 310
Helix 22
AC4
B
77 84Right-handed alpha
Helix 23
AC5
B
96 115Right-handed alpha
Helix 24
AC6
B
130 134Right-handed 310
Helix 25
AC7
B
137 148Right-handed alpha
Helix 26
AC8
B
163 178Right-handed alpha
Helix 27
AC9
C
8 18Right-handed alpha
Helix 28
AD1
C
31 49Right-handed alpha
Helix 29
AD2
C
68 80Right-handed alpha
Helix 30
AD3
C
100 114Right-handed alpha
Helix 31
AD4
C
123 127Right-handed 310
Helix 32
AD5
C
129 134Right-handed alpha
Helix 33
AD6
C
135 144Right-handed alpha
Helix 34
AD7
C
146 157Right-handed alpha
Helix 35
AD8
C
182 188Right-handed alpha
Helix 36
AD9
C
199 207Right-handed alpha
Helix 37
AE1
C
228 240Right-handed alpha
Helix 38
AE2
C
271 275Right-handed 310
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There are 6 sheets in PDB entry 7SD0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
C
290 293parallel
Strand 3
C
283 285anti-parallel
Strand 4
C
59 61anti-parallel
Strand 5
C
87 89parallel
Strand 6
C
118 120parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 106first strand
Strand 2
A
127 129parallel
Strand 3
A
150 152parallel
Strand 4
A
173 175parallel
Strand 5
A
196 198parallel
Strand 6
A
219 222parallel
Strand 7
A
242 245parallel
Strand 8
A
265 267parallel
Strand 9
A
288 290parallel
Strand 10
A
311 313parallel
Strand 11
A
335 337parallel
Strand 12
A
359 361parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 431first strand
Strand 2
A
452 454parallel
Strand 3
A
475 477parallel
Strand 4
A
498 500parallel
Strand 5
A
521 523parallel
Strand 6
A
545 547parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 49first strand
Strand 2
B
60 67anti-parallel
Strand 3
B
53 55anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 49first strand
Strand 2
B
60 67anti-parallel
Strand 3
B
13 19parallel
Strand 4
B
87 93parallel
Strand 5
B
121 126parallel
Strand 6
B
152 154parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 55first strand
Strand 2
C
162 165parallel
Strand 3
C
169 171anti-parallel
Strand 4
C
243 246parallel
Strand 5
C
263 266parallel
Strand 6
C
255 258anti-parallel
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