Analysis of interatomic Contacts of Structural Units in PDB entry:
7SD3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7SD3 entry

There are 12 chains in PDB entry 7SD3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLU 1	GLU 213
G	GLN 1	PRO 227
N	GLU 1	GLU 213
K	GLN 1	PRO 227
M	GLU 1	GLU 213
I	GLN 1	PRO 227
A	ALA 31	VAL 504
B	PHE 522	LEU 684
C	ALA 31	VAL 504
D	PHE 522	LEU 684
E	ALA 31	VAL 504
F	PHE 522	LEU 684

There are 54 helices in PDB entry 7SD3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	28	31	Right-handed 310
Helix 2	AA2	H	121	126	Right-handed alpha
Helix 3	AA3	H	182	187	Right-handed alpha
Helix 4	AA4	N	28	31	Right-handed 310
Helix 5	AA5	N	79	83	Right-handed 310
Helix 6	AA6	N	121	126	Right-handed alpha
Helix 7	AA7	N	182	187	Right-handed alpha
Helix 8	AA8	M	28	32	Right-handed 310
Helix 9	AA9	M	79	83	Right-handed 310
Helix 10	AB1	M	121	128	Right-handed alpha
Helix 11	AB2	M	183	187	Right-handed alpha
Helix 12	AB3	I	83	87	Right-handed 310
Helix 13	AB4	I	163	165	Right-handed 310
Helix 14	AB5	A	99	117	Right-handed alpha
Helix 15	AB6	A	122	126	Right-handed 310
Helix 16	AB7	A	333	347	Right-handed alpha
Helix 17	AB8	A	366	372	Right-handed alpha
Helix 18	AB9	A	473	479	Right-handed alpha
Helix 19	AC1	B	535	539	Right-handed 310
Helix 20	AC2	B	543	550	Right-handed alpha
Helix 21	AC3	B	552	558	Right-handed alpha
Helix 22	AC4	B	570	595	Right-handed alpha
Helix 23	AC5	B	618	623	Right-handed alpha
Helix 24	AC6	B	627	635	Right-handed alpha
Helix 25	AC7	B	638	652	Right-handed alpha
Helix 26	AC8	B	653	661	Right-handed alpha
Helix 27	AC9	B	673	684	Right-handed alpha
Helix 28	AD1	C	99	117	Right-handed alpha
Helix 29	AD2	C	122	126	Right-handed 310
Helix 30	AD3	C	333	347	Right-handed alpha
Helix 31	AD4	C	367	372	Right-handed alpha
Helix 32	AD5	C	473	479	Right-handed alpha
Helix 33	AD6	D	535	539	Right-handed 310
Helix 34	AD7	D	543	550	Right-handed alpha
Helix 35	AD8	D	552	558	Right-handed alpha
Helix 36	AD9	D	570	595	Right-handed alpha
Helix 37	AE1	D	618	623	Right-handed alpha
Helix 38	AE2	D	627	635	Right-handed alpha
Helix 39	AE3	D	638	652	Right-handed alpha
Helix 40	AE4	D	653	661	Right-handed alpha
Helix 41	AE5	D	675	684	Right-handed alpha
Helix 42	AE6	E	99	117	Right-handed alpha
Helix 43	AE7	E	122	126	Right-handed 310
Helix 44	AE8	E	333	347	Right-handed alpha
Helix 45	AE9	E	473	479	Right-handed alpha
Helix 46	AF1	F	535	539	Right-handed 310
Helix 47	AF2	F	543	550	Right-handed alpha
Helix 48	AF3	F	552	558	Right-handed alpha
Helix 49	AF4	F	570	595	Right-handed alpha
Helix 50	AF5	F	618	623	Right-handed alpha
Helix 51	AF6	F	627	635	Right-handed alpha
Helix 52	AF7	F	638	652	Right-handed alpha
Helix 53	AF8	F	653	662	Right-handed alpha
Helix 54	AF9	F	674	684	Right-handed alpha

There are 62 sheets in PDB entry 7SD3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	5	first strand
Strand 2	H	24	25	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	49	first strand
Strand 2	H	33	38	anti-parallel
Strand 3	H	85	90	anti-parallel
Strand 4	H	102	103	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	62	67	first strand
Strand 2	H	70	75	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	114	118	first strand
Strand 2	H	130	139	anti-parallel
Strand 3	H	172	181	anti-parallel
Strand 4	H	159	167	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	145	150	first strand
Strand 2	H	192	197	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	79	82	anti-parallel
Strand 4	G	67	69	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	27	28	first strand
Strand 2	K	56	59	anti-parallel
Strand 3	K	46	51	anti-parallel
Strand 4	K	34	39	anti-parallel
Strand 5	K	88	91	anti-parallel
Strand 6	K	108	111	anti-parallel
Strand 7	K	11	12	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	51	first strand
Strand 2	G	34	39	anti-parallel
Strand 3	G	88	94	anti-parallel
Strand 4	G	107	109	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	138	141	first strand
Strand 2	G	185	193	anti-parallel
Strand 3	G	144	147	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	138	141	first strand
Strand 2	G	185	193	anti-parallel
Strand 3	G	172	178	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	154	157	first strand
Strand 2	G	206	210	anti-parallel
Strand 3	G	220	225	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	5	7	first strand
Strand 2	N	19	24	anti-parallel
Strand 3	N	70	75	anti-parallel
Strand 4	N	63	65	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	13	first strand
Strand 2	N	103	106	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	44	48	first strand
Strand 2	N	33	38	anti-parallel
Strand 3	N	85	90	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	133	137	first strand
Strand 2	N	174	178	anti-parallel
Strand 3	N	162	163	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	144	145	first strand
Strand 2	N	197	198	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	191	192	first strand
Strand 2	N	209	210	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	5	first strand
Strand 2	K	23	25	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	17	20	first strand
Strand 2	K	80	82	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	93	94	first strand
Strand 2	K	102	103	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	122	123	first strand
Strand 2	K	140	147	anti-parallel
Strand 3	K	185	191	anti-parallel
Strand 4	K	171	173	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	122	123	first strand
Strand 2	K	140	147	anti-parallel
Strand 3	K	185	191	anti-parallel
Strand 4	K	177	178	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	154	157	first strand
Strand 2	K	206	210	anti-parallel
Strand 3	K	219	225	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	5	first strand
Strand 2	M	24	25	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	19	21	first strand
Strand 2	M	70	75	anti-parallel
Strand 3	M	62	67	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	44	48	first strand
Strand 2	M	35	38	anti-parallel
Strand 3	M	85	87	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	129	130	first strand
Strand 2	M	181	182	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	134	139	first strand
Strand 2	M	173	177	anti-parallel
Strand 3	M	161	163	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	144	146	first strand
Strand 2	M	196	198	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	153	154	first strand
Strand 2	M	149	150	anti-parallel
Strand 3	M	192	193	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	6	first strand
Strand 2	I	17	25	anti-parallel
Strand 3	I	77	82	anti-parallel
Strand 4	I	69	72	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	109	111	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	45	51	first strand
Strand 2	I	34	39	anti-parallel
Strand 3	I	89	95	anti-parallel
Strand 4	I	100	102	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	120	123	first strand
Strand 2	I	142	145	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	153	157	first strand
Strand 2	I	208	211	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	497	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	B	603	609	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	485	489	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	83	85	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	93	first strand
Strand 2	A	237	239	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	133	first strand
Strand 2	A	146	153	anti-parallel
Strand 3	A	162	169	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	174	first strand
Strand 2	A	192	193	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	441	454	anti-parallel
Strand 3	A	464	467	anti-parallel
Strand 4	A	357	359	parallel

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There are 8 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	273	first strand
Strand 2	A	284	286	anti-parallel
Strand 3	A	441	454	anti-parallel
Strand 4	A	293	298	anti-parallel
Strand 5	A	328	331	anti-parallel
Strand 6	A	415	419	anti-parallel
Strand 7	A	381	384	anti-parallel
Strand 8	A	373	376	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	308	first strand
Strand 2	A	314	318	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	423	first strand
Strand 2	A	431	433	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	492	497	first strand
Strand 2	C	35	40	anti-parallel
Strand 3	D	603	609	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	485	489	anti-parallel
Strand 3	C	223	228	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	83	85	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	93	first strand
Strand 2	C	237	239	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	133	first strand
Strand 2	C	146	153	anti-parallel
Strand 3	C	162	169	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	174	first strand
Strand 2	C	192	193	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	441	454	anti-parallel
Strand 3	C	464	467	anti-parallel
Strand 4	C	357	359	parallel

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There are 8 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	273	first strand
Strand 2	C	284	286	anti-parallel
Strand 3	C	441	454	anti-parallel
Strand 4	C	293	298	anti-parallel
Strand 5	C	328	331	anti-parallel
Strand 6	C	415	419	anti-parallel
Strand 7	C	381	384	anti-parallel
Strand 8	C	373	376	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	308	first strand
Strand 2	C	314	318	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	421	423	first strand
Strand 2	C	431	433	anti-parallel

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There are 3 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	492	497	first strand
Strand 2	E	35	40	anti-parallel
Strand 3	F	603	609	anti-parallel

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There are 5 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	485	489	anti-parallel
Strand 3	E	223	228	anti-parallel
Strand 4	E	242	245	anti-parallel
Strand 5	E	83	85	anti-parallel

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There are 2 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	93	first strand
Strand 2	E	237	239	anti-parallel

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There are 3 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	133	first strand
Strand 2	E	146	153	anti-parallel
Strand 3	E	162	169	anti-parallel

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There are 2 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	173	174	first strand
Strand 2	E	192	193	anti-parallel

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There are 4 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	261	first strand
Strand 2	E	441	454	anti-parallel
Strand 3	E	464	467	anti-parallel
Strand 4	E	357	359	parallel

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There are 8 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	272	273	first strand
Strand 2	E	284	286	anti-parallel
Strand 3	E	441	454	anti-parallel
Strand 4	E	293	298	anti-parallel
Strand 5	E	328	331	anti-parallel
Strand 6	E	415	419	anti-parallel
Strand 7	E	381	384	anti-parallel
Strand 8	E	373	376	anti-parallel

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There are 2 strands in AG7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	308	first strand
Strand 2	E	314	318	anti-parallel

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There are 2 strands in AG8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	421	423	first strand
Strand 2	E	431	433	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7SD3

Analysis of interatomic Contacts of Structural Units in PDB entry:
7SD3