Analysis of interatomic Contacts of Structural Units in PDB entry:
7SDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SDD entry

There is 1 chain in PDB entry 7SDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 28ILE 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7SDD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 62Right-handed alpha
Helix 2
AA2
A
81 96Right-handed alpha
Helix 3
AA3
A
125 129Right-handed 310
Helix 4
AA4
A
135 152Right-handed alpha
Helix 5
AA5
A
162 167Right-handed alpha
Helix 6
AA6
A
183 191Right-handed alpha
Helix 7
AA7
A
207 220Right-handed alpha
Helix 8
AA8
A
235 251Right-handed alpha
Helix 9
AA9
A
255 264Right-handed alpha
Helix 10
AB1
A
279 281Right-handed 310
Helix 11
AB2
A
282 305Right-handed alpha
Helix 12
AB3
A
310 319Right-handed alpha
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There are 2 sheets in PDB entry 7SDD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 177first strand
Strand 2
A
155 161anti-parallel
Strand 3
A
37 40parallel
Strand 4
A
119 124anti-parallel
Strand 5
A
113 116anti-parallel
Strand 6
A
181 182anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
74 77anti-parallel
Strand 3
A
226 230parallel
Strand 4
A
103 109parallel
Strand 5
A
194 200parallel
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