Analysis of interatomic Contacts of Structural Units in PDB entry:
7SED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SED entry

There is 1 chain in PDB entry 7SED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 86PRO 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 7SED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
142 150Right-handed alpha
Helix 2
AA2
A
171 182Right-handed alpha
Helix 3
AA3
A
193 207Right-handed alpha
Helix 4
AA4
A
219 227Right-handed 310
Helix 5
AA5
A
241 253Right-handed alpha
Helix 6
AA6
A
266 270Right-handed alpha
Helix 7
AA7
A
274 288Right-handed alpha
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There are 2 sheets in PDB entry 7SED. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
A
96 98anti-parallel
Strand 3
A
107 109anti-parallel
Strand 4
A
130 136anti-parallel
Strand 5
A
122 127anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 213first strand
Strand 2
A
186 190parallel
Strand 3
A
162 166parallel
Strand 4
A
230 235parallel
Strand 5
A
254 265parallel
Strand 6
A
306 313anti-parallel
Strand 7
A
291 298anti-parallel
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