Analysis of interatomic Contacts of Structural Units in PDB entry:
7SF6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SF6 entry

There is 1 chain in PDB entry 7SF6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 43THR 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 7SF6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 77Right-handed alpha
Helix 2
AA2
A
85 89Right-handed 310
Helix 3
AA3
A
93 98Right-handed alpha
Helix 4
AA4
A
112 119Right-handed alpha
Helix 5
AA5
A
126 131Right-handed 310
Helix 6
AA6
A
132 140Right-handed alpha
Helix 7
AA7
A
158 179Right-handed alpha
Helix 8
AA8
A
180 202Right-handed alpha
Helix 9
AA9
A
228 237Right-handed alpha
Helix 10
AB1
A
257 265Right-handed alpha
Helix 11
AB2
A
275 278Right-handed 310
Helix 12
AB3
A
286 293Right-handed alpha
Helix 13
AB4
A
294 298Right-handed 310
Helix 14
AB5
A
300 305Right-handed alpha
Helix 15
AB6
A
314 318Right-handed 310
Helix 16
AB7
A
320 336Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 7SF6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 49first strand
Strand 2
A
52 57anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
122 125parallel
Strand 3
A
144 147parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
102 103parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 220first strand
Strand 2
A
207 214anti-parallel
Strand 3
A
239 240parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 220first strand
Strand 2
A
207 214anti-parallel
Strand 3
A
268 273parallel
Strand 4
A
308 310parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il