Analysis of interatomic Contacts of Structural Units in PDB entry:
7SF7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SF7 entry

There are 4 chains in PDB entry 7SF7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 842LEU 1116
B
 GLU 8GLN 230
C
 GLU 3ASN 340
D
 ILE 9PHE 61
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 7SF7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
859 879Right-handed alpha
Helix 2
AA2
A
880 889Right-handed alpha
Helix 3
AA3
A
896 917Right-handed alpha
Helix 4
AA4
A
923 957Right-handed alpha
Helix 5
AA5
A
968 975Right-handed alpha
Helix 6
AA6
A
976 989Right-handed alpha
Helix 7
AA7
A
1008 1038Right-handed alpha
Helix 8
AA8
A
1048 1052Right-handed 310
Helix 9
AA9
A
1053 1058Right-handed alpha
Helix 10
AB1
A
1059 1065Right-handed alpha
Helix 11
AB2
A
1066 1073Right-handed 310
Helix 12
AB3
A
1080 1090Right-handed alpha
Helix 13
AB4
A
1092 1102Right-handed alpha
Helix 14
AB5
A
1105 1116Right-handed alpha
Helix 15
AB6
B
8 11Right-handed 310
Helix 16
AB7
B
12 25Right-handed alpha
Helix 17
AB8
B
26 31Right-handed alpha
Helix 18
AB9
B
45 52Right-handed alpha
Helix 19
AC1
B
114 116Right-handed 310
Helix 20
AC2
B
117 130Right-handed alpha
Helix 21
AC3
B
171 185Right-handed alpha
Helix 22
AC4
B
206 227Right-handed alpha
Helix 23
AC5
C
4 13Right-handed alpha
Helix 24
AC6
C
21 25Right-handed 310
Helix 25
AC7
C
29 35Right-handed alpha
Helix 26
AC8
D
10 22Right-handed alpha
Helix 27
AC9
D
29 44Right-handed alpha
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There are 8 sheets in PDB entry 7SF7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 75first strand
Strand 2
B
80 85anti-parallel
Strand 3
B
34 39parallel
Strand 4
B
105 110parallel
Strand 5
B
138 143parallel
Strand 6
B
195 199parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 51first strand
Strand 2
C
336 339anti-parallel
Strand 3
C
327 331anti-parallel
Strand 4
C
315 320anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 62first strand
Strand 2
C
71 74anti-parallel
Strand 3
C
78 81anti-parallel
Strand 4
C
91 94anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 103first strand
Strand 2
C
111 116anti-parallel
Strand 3
C
120 125anti-parallel
Strand 4
C
134 140anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
146 153first strand
Strand 2
C
156 161anti-parallel
Strand 3
C
165 170anti-parallel
Strand 4
C
175 180anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
190 192first strand
Strand 2
C
198 201anti-parallel
Strand 3
C
207 212anti-parallel
Strand 4
C
218 223anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 232first strand
Strand 2
C
240 245anti-parallel
Strand 3
C
250 254anti-parallel
Strand 4
C
260 264anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
273 277first strand
Strand 2
C
285 289anti-parallel
Strand 3
C
294 297anti-parallel
Strand 4
C
304 307anti-parallel
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