Analysis of interatomic Contacts of Structural Units in PDB entry:
7SF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SF8 entry

There are 4 chains in PDB entry 7SF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 383LEU 657
B
 GLU 8GLN 230
C
 GLU 3ASN 340
D
 ILE 9PHE 61
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7SF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
384 388Right-handed 310
Helix 2
AA2
A
396 427Right-handed alpha
Helix 3
AA3
A
434 464Right-handed alpha
Helix 4
AA4
A
467 499Right-handed alpha
Helix 5
AA5
A
508 529Right-handed alpha
Helix 6
AA6
A
532 534Right-handed 310
Helix 7
AA7
A
560 568Right-handed alpha
Helix 8
AA8
A
568 591Right-handed alpha
Helix 9
AA9
A
602 614Right-handed alpha
Helix 10
AB1
A
615 625Right-handed 310
Helix 11
AB2
A
629 643Right-handed alpha
Helix 12
AB3
A
643 656Right-handed alpha
Helix 13
AB4
B
12 26Right-handed alpha
Helix 14
AB5
B
26 32Right-handed alpha
Helix 15
AB6
B
45 52Right-handed alpha
Helix 16
AB7
B
117 130Right-handed alpha
Helix 17
AB8
B
148 153Right-handed alpha
Helix 18
AB9
B
157 161Right-handed 310
Helix 19
AC1
B
171 185Right-handed alpha
Helix 20
AC2
B
206 228Right-handed alpha
Helix 21
AC3
C
4 25Right-handed alpha
Helix 22
AC4
C
29 34Right-handed alpha
Helix 23
AC5
D
10 24Right-handed alpha
Helix 24
AC6
D
29 44Right-handed alpha
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There are 9 sheets in PDB entry 7SF8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 537first strand
Strand 2
A
557 558anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 75first strand
Strand 2
B
80 86anti-parallel
Strand 3
B
34 39parallel
Strand 4
B
105 110parallel
Strand 5
B
138 143parallel
Strand 6
B
195 199parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 51first strand
Strand 2
C
336 339anti-parallel
Strand 3
C
327 331anti-parallel
Strand 4
C
315 320anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 63first strand
Strand 2
C
69 74anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
88 94anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 105first strand
Strand 2
C
111 116anti-parallel
Strand 3
C
121 125anti-parallel
Strand 4
C
134 139anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
146 151first strand
Strand 2
C
156 161anti-parallel
Strand 3
C
166 170anti-parallel
Strand 4
C
175 180anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
187 192first strand
Strand 2
C
198 203anti-parallel
Strand 3
C
207 212anti-parallel
Strand 4
C
218 223anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 234first strand
Strand 2
C
240 245anti-parallel
Strand 3
C
250 254anti-parallel
Strand 4
C
259 264anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
273 278first strand
Strand 2
C
284 289anti-parallel
Strand 3
C
294 298anti-parallel
Strand 4
C
304 308anti-parallel
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