Analysis of interatomic Contacts of Structural Units in PDB entry:
7SHM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SHM entry

There are 2 chains in PDB entry 7SHM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 64LYS 683
B
 LYS 64LYS 683
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 7SHM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
68 83Right-handed alpha
Helix 2
AA2
A
88 122Right-handed alpha
Helix 3
AA3
A
126 149Right-handed alpha
Helix 4
AA4
A
152 175Right-handed alpha
Helix 5
AA5
A
180 185Right-handed alpha
Helix 6
AA6
A
192 197Right-handed alpha
Helix 7
AA7
A
198 234Right-handed alpha
Helix 8
AA8
A
242 261Right-handed alpha
Helix 9
AA9
A
264 289Right-handed alpha
Helix 10
AB1
A
289 296Right-handed alpha
Helix 11
AB2
A
298 324Right-handed alpha
Helix 12
AB3
A
324 334Right-handed alpha
Helix 13
AB4
A
336 352Right-handed alpha
Helix 14
AB5
A
378 404Right-handed alpha
Helix 15
AB6
A
406 431Right-handed alpha
Helix 16
AB7
A
515 521Right-handed alpha
Helix 17
AB8
A
553 558Right-handed alpha
Helix 18
AB9
A
562 570Right-handed alpha
Helix 19
AC1
A
572 583Right-handed alpha
Helix 20
AC2
A
600 605Right-handed alpha
Helix 21
AC3
A
606 621Right-handed alpha
Helix 22
AC4
A
636 644Right-handed alpha
Helix 23
AC5
A
644 651Right-handed alpha
Helix 24
AC6
A
663 667Right-handed 310
Helix 25
AC7
B
68 83Right-handed alpha
Helix 26
AC8
B
88 122Right-handed alpha
Helix 27
AC9
B
126 149Right-handed alpha
Helix 28
AD1
B
152 175Right-handed alpha
Helix 29
AD2
B
180 185Right-handed alpha
Helix 30
AD3
B
192 197Right-handed alpha
Helix 31
AD4
B
198 234Right-handed alpha
Helix 32
AD5
B
242 261Right-handed alpha
Helix 33
AD6
B
264 289Right-handed alpha
Helix 34
AD7
B
289 296Right-handed alpha
Helix 35
AD8
B
298 324Right-handed alpha
Helix 36
AD9
B
324 334Right-handed alpha
Helix 37
AE1
B
336 352Right-handed alpha
Helix 38
AE2
B
377 404Right-handed alpha
Helix 39
AE3
B
406 431Right-handed alpha
Helix 40
AE4
B
516 521Right-handed alpha
Helix 41
AE5
B
553 558Right-handed alpha
Helix 42
AE6
B
562 570Right-handed alpha
Helix 43
AE7
B
572 583Right-handed alpha
Helix 44
AE8
B
600 605Right-handed alpha
Helix 45
AE9
B
606 621Right-handed alpha
Helix 46
AF1
B
636 644Right-handed alpha
Helix 47
AF2
B
644 651Right-handed alpha
Helix 48
AF3
B
663 667Right-handed 310
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There are 6 sheets in PDB entry 7SHM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 469first strand
Strand 2
A
530 533parallel
Strand 3
A
474 477anti-parallel
Strand 4
A
496 497anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 482first strand
Strand 2
A
488 493anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
539 542first strand
Strand 2
A
625 629parallel
Strand 3
A
654 657parallel
Strand 4
A
503 506parallel
Strand 5
A
670 672parallel
Strand 6
A
681 682anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
466 469first strand
Strand 2
B
530 533parallel
Strand 3
B
474 477anti-parallel
Strand 4
B
496 497anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
479 482first strand
Strand 2
B
488 493anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
539 542first strand
Strand 2
B
625 629parallel
Strand 3
B
654 657parallel
Strand 4
B
503 506parallel
Strand 5
B
670 672parallel
Strand 6
B
681 682anti-parallel
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