Analysis of interatomic Contacts of Structural Units in PDB entry:
7SHP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7SHP entry

There are 4 chains in PDB entry 7SHP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 154	GLU 336
B	SER 154	GLN 335
C	SER 154	GLU 336
D	SER 154	GLU 336

There are 27 helices in PDB entry 7SHP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	154	166	Right-handed alpha
Helix 2	AA2	A	167	185	Right-handed alpha
Helix 3	AA3	A	185	192	Right-handed alpha
Helix 4	AA4	A	263	274	Right-handed alpha
Helix 5	AA5	A	275	278	Right-handed 310
Helix 6	AA6	A	280	302	Right-handed alpha
Helix 7	AA7	A	324	334	Right-handed alpha
Helix 8	AA8	B	155	166	Right-handed alpha
Helix 9	AA9	B	167	185	Right-handed alpha
Helix 10	AB1	B	263	274	Right-handed alpha
Helix 11	AB2	B	275	278	Right-handed 310
Helix 12	AB3	B	280	301	Right-handed alpha
Helix 13	AB4	B	305	307	Right-handed 310
Helix 14	AB5	B	324	334	Right-handed alpha
Helix 15	AB6	C	155	167	Right-handed alpha
Helix 16	AB7	C	167	185	Right-handed alpha
Helix 17	AB8	C	186	191	Right-handed 310
Helix 18	AB9	C	263	274	Right-handed alpha
Helix 19	AC1	C	275	278	Right-handed 310
Helix 20	AC2	C	280	302	Right-handed alpha
Helix 21	AC3	C	324	334	Right-handed alpha
Helix 22	AC4	D	155	166	Right-handed alpha
Helix 23	AC5	D	167	186	Right-handed alpha
Helix 24	AC6	D	263	274	Right-handed alpha
Helix 25	AC7	D	275	278	Right-handed 310
Helix 26	AC8	D	280	302	Right-handed alpha
Helix 27	AC9	D	324	334	Right-handed alpha

There are 8 sheets in PDB entry 7SHP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	224	first strand
Strand 2	A	243	249	anti-parallel
Strand 3	A	252	261	anti-parallel
Strand 4	A	198	203	parallel
Strand 5	A	309	314	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	232	first strand
Strand 2	A	235	240	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	224	first strand
Strand 2	B	243	249	anti-parallel
Strand 3	B	252	261	anti-parallel
Strand 4	B	198	203	parallel
Strand 5	B	309	314	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	232	first strand
Strand 2	B	235	240	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	224	first strand
Strand 2	C	243	249	anti-parallel
Strand 3	C	252	261	anti-parallel
Strand 4	C	198	203	parallel
Strand 5	C	309	314	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	232	first strand
Strand 2	C	235	240	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	224	first strand
Strand 2	D	243	249	anti-parallel
Strand 3	D	252	261	anti-parallel
Strand 4	D	198	203	parallel
Strand 5	D	309	314	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	228	232	first strand
Strand 2	D	235	240	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7SHP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7SHP