Analysis of interatomic Contacts of Structural Units in PDB entry:
7SI7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SI7 entry

There is 1 chain in PDB entry 7SI7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 640ASP 1413
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 7SI7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
640 671Right-handed alpha
Helix 2
AA2
A
679 683Right-handed alpha
Helix 3
AA3
A
690 707Right-handed alpha
Helix 4
AA4
A
707 721Right-handed alpha
Helix 5
AA5
A
725 752Right-handed alpha
Helix 6
AA6
A
762 783Right-handed alpha
Helix 7
AA7
A
787 796Right-handed alpha
Helix 8
AA8
A
887 890Right-handed 310
Helix 9
AA9
A
891 907Right-handed alpha
Helix 10
AB1
A
912 943Right-handed alpha
Helix 11
AB2
A
944 951Right-handed alpha
Helix 12
AB3
A
952 956Right-handed 310
Helix 13
AB4
A
959 980Right-handed alpha
Helix 14
AB5
A
982 986Right-handed 310
Helix 15
AB6
A
987 1002Right-handed alpha
Helix 16
AB7
A
1009 1016Right-handed alpha
Helix 17
AB8
A
1049 1061Right-handed alpha
Helix 18
AB9
A
1066 1080Right-handed alpha
Helix 19
AC1
A
1105 1112Right-handed alpha
Helix 20
AC2
A
1156 1164Right-handed alpha
Helix 21
AC3
A
1168 1181Right-handed alpha
Helix 22
AC4
A
1205 1218Right-handed alpha
Helix 23
AC5
A
1229 1241Right-handed alpha
Helix 24
AC6
A
1250 1264Right-handed alpha
Helix 25
AC7
A
1277 1284Right-handed alpha
Helix 26
AC8
A
1294 1301Right-handed alpha
Helix 27
AC9
A
1310 1346Right-handed alpha
Helix 28
AD1
A
1357 1379Right-handed alpha
Helix 29
AD2
A
1380 1382Right-handed 310
Helix 30
AD3
A
1386 1394Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 7SI7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
814 818first strand
Strand 2
A
799 803anti-parallel
Strand 3
A
827 830anti-parallel
Strand 4
A
880 886anti-parallel
Strand 5
A
839 843anti-parallel
Strand 6
A
868 869anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
861 863first strand
Strand 2
A
847 850anti-parallel
Strand 3
A
874 876anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1004 1006first strand
Strand 2
A
1303 1305anti-parallel
Strand 3
A
1286 1290parallel
Strand 4
A
1268 1271parallel
Strand 5
A
1020 1023parallel
Strand 6
A
1221 1225parallel
Strand 7
A
1244 1247parallel
Strand 8
A
1407 1410parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1035 1041first strand
Strand 2
A
1193 1201anti-parallel
Strand 3
A
1184 1190anti-parallel
Strand 4
A
1151 1155anti-parallel
Strand 5
A
1098 1102anti-parallel
Strand 6
A
1090 1094anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il