Analysis of interatomic Contacts of Structural Units in PDB entry:
7SIT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SIT entry

There are 4 chains in PDB entry 7SIT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 36SER 361
B
 SER 32THR 417
C
 LEU 36SER 361
D
 SER 32THR 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 7SIT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 79Right-handed alpha
Helix 2
AA2
A
89 92Right-handed 310
Helix 3
AA3
A
93 107Right-handed alpha
Helix 4
AA4
A
109 113Right-handed 310
Helix 5
AA5
A
125 129Right-handed 310
Helix 6
AA6
A
132 148Right-handed alpha
Helix 7
AA7
A
165 179Right-handed alpha
Helix 8
AA8
A
191 205Right-handed alpha
Helix 9
AA9
A
227 236Right-handed alpha
Helix 10
AB1
A
270 279Right-handed alpha
Helix 11
AB2
A
279 299Right-handed alpha
Helix 12
AB3
A
302 312Right-handed alpha
Helix 13
AB4
A
326 335Right-handed alpha
Helix 14
AB5
A
335 343Right-handed alpha
Helix 15
AB6
A
344 356Right-handed alpha
Helix 16
AB7
B
48 52Right-handed alpha
Helix 17
AB8
B
64 67Right-handed 310
Helix 18
AB9
B
84 95Right-handed alpha
Helix 19
AC1
B
105 117Right-handed alpha
Helix 20
AC2
B
119 131Right-handed alpha
Helix 21
AC3
B
150 155Right-handed alpha
Helix 22
AC4
B
159 183Right-handed alpha
Helix 23
AC5
B
222 236Right-handed alpha
Helix 24
AC6
B
237 242Right-handed alpha
Helix 25
AC7
B
253 262Right-handed alpha
Helix 26
AC8
B
289 297Right-handed alpha
Helix 27
AC9
B
298 305Right-handed 310
Helix 28
AD1
B
307 319Right-handed alpha
Helix 29
AD2
B
320 346Right-handed alpha
Helix 30
AD3
B
357 359Right-handed 310
Helix 31
AD4
B
360 369Right-handed alpha
Helix 32
AD5
B
380 400Right-handed alpha
Helix 33
AD6
B
401 416Right-handed alpha
Helix 34
AD7
C
65 78Right-handed alpha
Helix 35
AD8
C
89 92Right-handed 310
Helix 36
AD9
C
93 107Right-handed alpha
Helix 37
AE1
C
109 113Right-handed 310
Helix 38
AE2
C
125 129Right-handed 310
Helix 39
AE3
C
132 148Right-handed alpha
Helix 40
AE4
C
165 179Right-handed alpha
Helix 41
AE5
C
191 205Right-handed alpha
Helix 42
AE6
C
222 227Right-handed alpha
Helix 43
AE7
C
227 236Right-handed alpha
Helix 44
AE8
C
249 253Right-handed 310
Helix 45
AE9
C
270 278Right-handed alpha
Helix 46
AF1
C
279 299Right-handed alpha
Helix 47
AF2
C
302 312Right-handed alpha
Helix 48
AF3
C
326 335Right-handed alpha
Helix 49
AF4
C
336 338Right-handed 310
Helix 50
AF5
C
344 356Right-handed alpha
Helix 51
AF6
D
48 52Right-handed alpha
Helix 52
AF7
D
61 66Right-handed alpha
Helix 53
AF8
D
81 95Right-handed alpha
Helix 54
AF9
D
105 117Right-handed alpha
Helix 55
AG1
D
119 131Right-handed alpha
Helix 56
AG2
D
159 183Right-handed alpha
Helix 57
AG3
D
225 239Right-handed alpha
Helix 58
AG4
D
253 262Right-handed alpha
Helix 59
AG5
D
263 270Right-handed alpha
Helix 60
AG6
D
289 296Right-handed alpha
Helix 61
AG7
D
297 306Right-handed 310
Helix 62
AG8
D
307 319Right-handed alpha
Helix 63
AG9
D
320 346Right-handed alpha
Helix 64
AH1
D
357 359Right-handed 310
Helix 65
AH2
D
360 369Right-handed alpha
Helix 66
AH3
D
380 400Right-handed alpha
Helix 67
AH4
D
401 416Right-handed alpha
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There are 6 sheets in PDB entry 7SIT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
48 50anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
83 85parallel
Strand 3
A
114 119parallel
Strand 4
A
152 157parallel
Strand 5
A
182 188parallel
Strand 6
A
212 214parallel
Strand 7
A
239 243parallel
Strand 8
A
317 322parallel
Strand 9
A
52 55parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 47first strand
Strand 2
B
34 39anti-parallel
Strand 3
B
75 78parallel
Strand 4
B
69 70anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 41first strand
Strand 2
C
48 50anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 55first strand
Strand 2
C
83 85parallel
Strand 3
C
114 119parallel
Strand 4
C
152 157parallel
Strand 5
C
182 188parallel
Strand 6
C
212 214parallel
Strand 7
C
239 243parallel
Strand 8
C
317 322parallel
Strand 9
C
52 55parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
42 47first strand
Strand 2
D
34 39anti-parallel
Strand 3
D
75 78parallel
Strand 4
D
69 70anti-parallel
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