Analysis of interatomic Contacts of Structural Units in PDB entry:
7SJ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SJ2 entry

There are 2 chains in PDB entry 7SJ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 56ARG 525
B
 VAL 56ARG 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 7SJ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 62Right-handed alpha
Helix 2
AA2
A
70 75Right-handed alpha
Helix 3
AA3
A
91 105Right-handed alpha
Helix 4
AA4
A
130 134Right-handed 310
Helix 5
AA5
A
138 151Right-handed alpha
Helix 6
AA6
A
181 185Right-handed alpha
Helix 7
AA7
A
187 191Right-handed 310
Helix 8
AA8
A
195 201Right-handed alpha
Helix 9
AA9
A
202 206Right-handed 310
Helix 10
AB1
A
227 230Right-handed 310
Helix 11
AB2
A
253 267Right-handed alpha
Helix 12
AB3
A
283 293Right-handed alpha
Helix 13
AB4
A
293 303Right-handed alpha
Helix 14
AB5
A
312 324Right-handed alpha
Helix 15
AB6
A
329 338Right-handed alpha
Helix 16
AB7
A
346 357Right-handed alpha
Helix 17
AB8
A
363 381Right-handed alpha
Helix 18
AB9
A
382 387Right-handed alpha
Helix 19
AC1
A
407 413Right-handed alpha
Helix 20
AC2
A
414 425Right-handed alpha
Helix 21
AC3
A
449 463Right-handed alpha
Helix 22
AC4
A
480 496Right-handed alpha
Helix 23
AC5
A
517 525Right-handed alpha
Helix 24
AC6
B
57 62Right-handed alpha
Helix 25
AC7
B
70 75Right-handed alpha
Helix 26
AC8
B
91 104Right-handed alpha
Helix 27
AC9
B
138 151Right-handed alpha
Helix 28
AD1
B
181 185Right-handed alpha
Helix 29
AD2
B
187 191Right-handed 310
Helix 30
AD3
B
195 201Right-handed alpha
Helix 31
AD4
B
202 206Right-handed 310
Helix 32
AD5
B
227 230Right-handed 310
Helix 33
AD6
B
253 267Right-handed alpha
Helix 34
AD7
B
283 293Right-handed alpha
Helix 35
AD8
B
293 303Right-handed alpha
Helix 36
AD9
B
312 324Right-handed alpha
Helix 37
AE1
B
329 338Right-handed alpha
Helix 38
AE2
B
346 358Right-handed alpha
Helix 39
AE3
B
363 381Right-handed alpha
Helix 40
AE4
B
382 387Right-handed alpha
Helix 41
AE5
B
407 413Right-handed alpha
Helix 42
AE6
B
414 425Right-handed alpha
Helix 43
AE7
B
449 463Right-handed alpha
Helix 44
AE8
B
480 496Right-handed alpha
Helix 45
AE9
B
514 527Right-handed alpha
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There are 10 sheets in PDB entry 7SJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 180first strand
Strand 2
A
157 161parallel
Strand 3
A
81 85parallel
Strand 4
A
212 217parallel
Strand 5
A
279 282anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 222first strand
Strand 2
A
467 472anti-parallel
Strand 3
A
441 446parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
237 243anti-parallel
Strand 3
A
273 274anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
237 243anti-parallel
Strand 3
A
433 436parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
428 429anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 180first strand
Strand 2
B
157 161parallel
Strand 3
B
81 85parallel
Strand 4
B
212 217parallel
Strand 5
B
279 282anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 222first strand
Strand 2
B
467 472anti-parallel
Strand 3
B
441 446parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 233first strand
Strand 2
B
237 243anti-parallel
Strand 3
B
273 274anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 233first strand
Strand 2
B
237 243anti-parallel
Strand 3
B
433 436parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 326first strand
Strand 2
B
428 429anti-parallel
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