Analysis of interatomic Contacts of Structural Units in PDB entry:
7SJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SJ3 entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 7SJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LEU 171
A
 PRO 173LEU 295
B
 HIS 11LEU 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 7SJ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 64Right-handed alpha
Helix 2
AA2
A
100 105Right-handed alpha
Helix 3
AA3
A
114 133Right-handed alpha
Helix 4
AA4
A
142 144Right-handed 310
Helix 5
AA5
A
177 181Right-handed 310
Helix 6
AA6
A
182 187Right-handed alpha
Helix 7
AA7
A
193 210Right-handed alpha
Helix 8
AA8
A
218 231Right-handed alpha
Helix 9
AA9
A
245 249Right-handed 310
Helix 10
AB1
A
265 276Right-handed alpha
Helix 11
AB2
A
285 291Right-handed alpha
Helix 12
AB3
B
18 23Right-handed alpha
Helix 13
AB4
B
24 36Right-handed alpha
Helix 14
AB5
B
37 39Right-handed 310
Helix 15
AB6
B
43 48Right-handed alpha
Helix 16
AB7
B
53 71Right-handed alpha
Helix 17
AB8
B
76 90Right-handed alpha
Helix 18
AB9
B
95 97Right-handed 310
Helix 19
AC1
B
98 115Right-handed alpha
Helix 20
AC2
B
120 128Right-handed alpha
Helix 21
AC3
B
133 148Right-handed alpha
Helix 22
AC4
B
157 167Right-handed alpha
Helix 23
AC5
B
174 192Right-handed alpha
Helix 24
AC6
B
193 196Right-handed 310
Helix 25
AC7
B
199 216Right-handed alpha
Helix 26
AC8
B
221 234Right-handed alpha
Helix 27
AC9
B
236 253Right-handed alpha
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There are 3 sheets in PDB entry 7SJ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 15first strand
Strand 2
A
18 24anti-parallel
Strand 3
A
31 37anti-parallel
Strand 4
A
88 94anti-parallel
Strand 5
A
74 80anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
146 148anti-parallel
Strand 3
A
154 156anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 137first strand
Strand 2
A
163 164anti-parallel
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