Analysis of interatomic Contacts of Structural Units in PDB entry:
7SJ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7SJ5 entry

There are 4 chains in PDB entry 7SJ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	ALA 341
B	SER 2	ALA 341
C	SER 2	ALA 341
D	SER 2	TYR 257

There are 60 helices in PDB entry 7SJ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	13	Right-handed alpha
Helix 2	AA2	A	13	19	Right-handed alpha
Helix 3	AA3	A	21	28	Right-handed alpha
Helix 4	AA4	A	42	44	Right-handed 310
Helix 5	AA5	A	64	67	Right-handed 310
Helix 6	AA6	A	97	103	Right-handed alpha
Helix 7	AA7	A	103	138	Right-handed alpha
Helix 8	AA8	A	157	159	Right-handed 310
Helix 9	AA9	A	169	173	Right-handed 310
Helix 10	AB1	A	180	189	Right-handed alpha
Helix 11	AB2	A	201	209	Right-handed alpha
Helix 12	AB3	A	211	218	Right-handed alpha
Helix 13	AB4	A	225	232	Right-handed alpha
Helix 14	AB5	A	233	236	Right-handed 310
Helix 15	AB6	A	290	296	Right-handed alpha
Helix 16	AB7	A	331	335	Right-handed 310
Helix 17	AB8	B	5	13	Right-handed alpha
Helix 18	AB9	B	13	19	Right-handed alpha
Helix 19	AC1	B	21	28	Right-handed alpha
Helix 20	AC2	B	42	44	Right-handed 310
Helix 21	AC3	B	64	67	Right-handed 310
Helix 22	AC4	B	97	102	Right-handed alpha
Helix 23	AC5	B	103	138	Right-handed alpha
Helix 24	AC6	B	157	159	Right-handed 310
Helix 25	AC7	B	169	173	Right-handed 310
Helix 26	AC8	B	180	189	Right-handed alpha
Helix 27	AC9	B	201	211	Right-handed alpha
Helix 28	AD1	B	211	218	Right-handed alpha
Helix 29	AD2	B	225	232	Right-handed alpha
Helix 30	AD3	B	233	236	Right-handed 310
Helix 31	AD4	B	290	296	Right-handed alpha
Helix 32	AD5	B	331	335	Right-handed 310
Helix 33	AD6	C	5	13	Right-handed alpha
Helix 34	AD7	C	13	19	Right-handed alpha
Helix 35	AD8	C	21	28	Right-handed alpha
Helix 36	AD9	C	42	44	Right-handed 310
Helix 37	AE1	C	99	102	Right-handed 310
Helix 38	AE2	C	103	138	Right-handed alpha
Helix 39	AE3	C	157	159	Right-handed 310
Helix 40	AE4	C	169	173	Right-handed 310
Helix 41	AE5	C	180	190	Right-handed alpha
Helix 42	AE6	C	201	210	Right-handed alpha
Helix 43	AE7	C	211	218	Right-handed alpha
Helix 44	AE8	C	225	232	Right-handed alpha
Helix 45	AE9	C	233	236	Right-handed 310
Helix 46	AF1	C	290	296	Right-handed alpha
Helix 47	AF2	C	331	335	Right-handed 310
Helix 48	AF3	D	5	13	Right-handed alpha
Helix 49	AF4	D	13	19	Right-handed alpha
Helix 50	AF5	D	21	28	Right-handed alpha
Helix 51	AF6	D	42	44	Right-handed 310
Helix 52	AF7	D	97	101	Right-handed 310
Helix 53	AF8	D	103	138	Right-handed alpha
Helix 54	AF9	D	157	161	Right-handed 310
Helix 55	AG1	D	179	189	Right-handed alpha
Helix 56	AG2	D	201	209	Right-handed alpha
Helix 57	AG3	D	211	217	Right-handed alpha
Helix 58	AG4	D	225	235	Right-handed alpha
Helix 59	AG5	D	290	296	Right-handed alpha
Helix 60	AG6	D	331	335	Right-handed 310

There are 27 sheets in PDB entry 7SJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	33	first strand
Strand 2	A	281	285	parallel
Strand 3	A	325	329	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	40	first strand
Strand 2	A	72	73	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	52	58	anti-parallel
Strand 3	A	68	70	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	52	58	anti-parallel
Strand 3	A	150	153	anti-parallel
Strand 4	A	139	142	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	83	first strand
Strand 2	A	317	322	anti-parallel
Strand 3	A	304	309	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	163	first strand
Strand 2	A	336	339	parallel
Strand 3	A	271	275	anti-parallel
Strand 4	A	197	200	anti-parallel
Strand 5	A	248	253	parallel
Strand 6	A	239	245	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	259	first strand
Strand 2	A	262	265	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	281	285	parallel
Strand 3	B	325	329	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	40	first strand
Strand 2	B	72	73	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	52	58	anti-parallel
Strand 3	B	68	70	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	52	58	anti-parallel
Strand 3	B	150	153	anti-parallel
Strand 4	B	139	142	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	83	first strand
Strand 2	B	316	322	anti-parallel
Strand 3	B	304	310	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	163	first strand
Strand 2	B	336	339	parallel
Strand 3	B	271	275	anti-parallel
Strand 4	B	197	200	anti-parallel
Strand 5	B	248	253	parallel
Strand 6	B	239	245	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	259	first strand
Strand 2	B	262	265	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	33	first strand
Strand 2	C	281	285	parallel
Strand 3	C	325	329	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	72	73	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	62	first strand
Strand 2	C	52	58	anti-parallel
Strand 3	C	68	70	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	62	first strand
Strand 2	C	52	58	anti-parallel
Strand 3	C	150	153	anti-parallel
Strand 4	C	139	142	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	83	first strand
Strand 2	C	317	322	anti-parallel
Strand 3	C	304	309	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	163	first strand
Strand 2	C	336	339	parallel
Strand 3	C	271	275	anti-parallel
Strand 4	C	197	200	anti-parallel
Strand 5	C	248	253	parallel
Strand 6	C	239	245	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	259	first strand
Strand 2	C	262	265	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	33	first strand
Strand 2	D	281	285	parallel
Strand 3	D	325	329	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	40	first strand
Strand 2	D	72	73	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	62	first strand
Strand 2	D	52	58	anti-parallel
Strand 3	D	68	70	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	62	first strand
Strand 2	D	52	58	anti-parallel
Strand 3	D	150	153	anti-parallel
Strand 4	D	139	142	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	84	first strand
Strand 2	D	317	322	anti-parallel
Strand 3	D	304	309	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	218	219	first strand
Strand 2	D	241	245	anti-parallel
Strand 3	D	248	252	anti-parallel
Strand 4	D	197	200	parallel
Strand 5	D	272	275	anti-parallel
Strand 6	D	336	338	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7SJ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
7SJ5