Analysis of interatomic Contacts of Structural Units in PDB entry:
7SJK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7SJK entry

There are 2 chains in PDB entry 7SJK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 391	ASP 656
B	THR 393	GLN 654

There are 10 helices in PDB entry 7SJK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	480	488	Right-handed alpha
Helix 2	AA2	A	517	521	Right-handed 310
Helix 3	AA3	A	594	596	Right-handed 310
Helix 4	AA4	A	612	616	Right-handed alpha
Helix 5	AA5	A	645	647	Right-handed 310
Helix 6	AA6	B	480	488	Right-handed alpha
Helix 7	AA7	B	517	521	Right-handed 310
Helix 8	AA8	B	594	596	Right-handed 310
Helix 9	AA9	B	612	616	Right-handed alpha
Helix 10	AB1	B	645	647	Right-handed 310

There are 10 sheets in PDB entry 7SJK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	397	first strand
Strand 2	A	649	653	anti-parallel
Strand 3	A	452	459	anti-parallel
Strand 4	A	641	643	anti-parallel
Strand 5	A	423	426	anti-parallel
Strand 6	A	408	411	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	397	first strand
Strand 2	A	649	653	anti-parallel
Strand 3	A	452	459	anti-parallel
Strand 4	A	586	593	anti-parallel
Strand 5	A	598	603	anti-parallel
Strand 6	A	606	611	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	406	first strand
Strand 2	A	436	442	anti-parallel
Strand 3	A	624	631	anti-parallel
Strand 4	A	471	477	anti-parallel
Strand 5	A	500	505	anti-parallel
Strand 6	A	534	542	anti-parallel
Strand 7	A	548	550	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	406	first strand
Strand 2	A	436	442	anti-parallel
Strand 3	A	624	631	anti-parallel
Strand 4	A	471	477	anti-parallel
Strand 5	A	500	505	anti-parallel
Strand 6	A	534	542	anti-parallel
Strand 7	A	565	567	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	510	511	first strand
Strand 2	A	514	515	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	397	first strand
Strand 2	B	649	652	anti-parallel
Strand 3	B	452	459	anti-parallel
Strand 4	B	641	643	anti-parallel
Strand 5	B	422	426	anti-parallel
Strand 6	B	408	412	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	397	first strand
Strand 2	B	649	652	anti-parallel
Strand 3	B	452	459	anti-parallel
Strand 4	B	586	593	anti-parallel
Strand 5	B	598	603	anti-parallel
Strand 6	B	606	611	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	402	406	first strand
Strand 2	B	436	442	anti-parallel
Strand 3	B	624	631	anti-parallel
Strand 4	B	471	477	anti-parallel
Strand 5	B	500	505	anti-parallel
Strand 6	B	534	542	anti-parallel
Strand 7	B	548	551	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	402	406	first strand
Strand 2	B	436	442	anti-parallel
Strand 3	B	624	631	anti-parallel
Strand 4	B	471	477	anti-parallel
Strand 5	B	500	505	anti-parallel
Strand 6	B	534	542	anti-parallel
Strand 7	B	565	567	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	510	511	first strand
Strand 2	B	514	515	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7SJK

Analysis of interatomic Contacts of Structural Units in PDB entry:
7SJK