Analysis of interatomic Contacts of Structural Units in PDB entry:
7SJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SJR entry

There are 3 chains in PDB entry 7SJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ARG 12ARG 877
A
 LEU 16GLN 1039
C
 T 2 T 59
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 7SJR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
14 22Right-handed alpha
Helix 2
AA2
B
29 37Right-handed alpha
Helix 3
AA3
B
54 67Right-handed alpha
Helix 4
AA4
B
70 72Right-handed 310
Helix 5
AA5
B
80 101Right-handed alpha
Helix 6
AA6
B
119 131Right-handed alpha
Helix 7
AA7
B
132 134Right-handed 310
Helix 8
AA8
B
144 159Right-handed alpha
Helix 9
AA9
B
172 187Right-handed alpha
Helix 10
AB1
B
197 206Right-handed alpha
Helix 11
AB2
B
219 249Right-handed alpha
Helix 12
AB3
B
253 268Right-handed alpha
Helix 13
AB4
B
268 279Right-handed alpha
Helix 14
AB5
B
291 298Right-handed alpha
Helix 15
AB6
B
332 337Right-handed alpha
Helix 16
AB7
B
359 364Right-handed alpha
Helix 17
AB8
B
402 425Right-handed alpha
Helix 18
AB9
B
441 450Right-handed alpha
Helix 19
AC1
B
469 481Right-handed alpha
Helix 20
AC2
B
484 493Right-handed alpha
Helix 21
AC3
B
500 514Right-handed alpha
Helix 22
AC4
B
523 530Right-handed alpha
Helix 23
AC5
B
539 544Right-handed alpha
Helix 24
AC6
B
554 572Right-handed alpha
Helix 25
AC7
B
578 590Right-handed alpha
Helix 26
AC8
B
591 599Right-handed alpha
Helix 27
AC9
B
609 623Right-handed alpha
Helix 28
AD1
B
632 643Right-handed alpha
Helix 29
AD2
B
729 759Right-handed alpha
Helix 30
AD3
B
786 794Right-handed alpha
Helix 31
AD4
B
839 853Right-handed alpha
Helix 32
AD5
B
863 877Right-handed alpha
Helix 33
AD6
A
34 46Right-handed alpha
Helix 34
AD7
A
62 77Right-handed alpha
Helix 35
AD8
A
93 106Right-handed alpha
Helix 36
AD9
A
119 134Right-handed alpha
Helix 37
AE1
A
148 153Right-handed 310
Helix 38
AE2
A
154 171Right-handed alpha
Helix 39
AE3
A
174 185Right-handed alpha
Helix 40
AE4
A
187 203Right-handed alpha
Helix 41
AE5
A
226 239Right-handed alpha
Helix 42
AE6
A
240 247Right-handed alpha
Helix 43
AE7
A
257 260Right-handed 310
Helix 44
AE8
A
261 272Right-handed alpha
Helix 45
AE9
A
316 329Right-handed alpha
Helix 46
AF1
A
356 374Right-handed alpha
Helix 47
AF2
A
394 403Right-handed alpha
Helix 48
AF3
A
419 435Right-handed alpha
Helix 49
AF4
A
438 446Right-handed 310
Helix 50
AF5
A
454 469Right-handed alpha
Helix 51
AF6
A
476 487Right-handed alpha
Helix 52
AF7
A
495 514Right-handed alpha
Helix 53
AF8
A
522 531Right-handed alpha
Helix 54
AF9
A
532 539Right-handed alpha
Helix 55
AG1
A
548 571Right-handed alpha
Helix 56
AG2
A
578 582Right-handed alpha
Helix 57
AG3
A
640 649Right-handed alpha
Helix 58
AG4
A
666 678Right-handed alpha
Helix 59
AG5
A
701 711Right-handed alpha
Helix 60
AG6
A
727 740Right-handed alpha
Helix 61
AG7
A
749 763Right-handed alpha
Helix 62
AG8
A
774 778Right-handed 310
Helix 63
AG9
A
797 805Right-handed alpha
Helix 64
AH1
A
807 816Right-handed alpha
Helix 65
AH2
A
823 838Right-handed alpha
Helix 66
AH3
A
843 855Right-handed alpha
Helix 67
AH4
A
861 887Right-handed alpha
Helix 68
AH5
A
950 962Right-handed alpha
Helix 69
AH6
A
996 1014Right-handed alpha
Helix 70
AH7
A
1024 1029Right-handed 310
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There are 8 sheets in PDB entry 7SJR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 118first strand
Strand 2
B
74 78parallel
Strand 3
B
281 284parallel
Strand 4
B
313 314parallel
Strand 5
B
42 46parallel
Strand 6
B
350 353parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 142first strand
Strand 2
B
251 252parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 398first strand
Strand 2
B
804 807parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
432 433first strand
Strand 2
B
675 676parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
57 59parallel
Strand 3
A
253 255parallel
Strand 4
A
279 281parallel
Strand 5
A
25 29parallel
Strand 6
A
306 309parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 354first strand
Strand 2
A
683 689parallel
Strand 3
A
618 621parallel
Strand 4
A
382 386parallel
Strand 5
A
604 607parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
898 900first strand
Strand 2
A
916 918anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
921 923first strand
Strand 2
A
931 933anti-parallel
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