Analysis of interatomic Contacts of Structural Units in PDB entry:
7SJY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7SJY entry

There are 2 chains in PDB entry 7SJY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 389	LYS 702
B	GLU 390	LYS 702

There are 19 helices in PDB entry 7SJY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	392	401	Right-handed alpha
Helix 2	AA2	A	432	436	Right-handed 310
Helix 3	AA3	A	484	488	Right-handed 310
Helix 4	AA4	A	531	535	Right-handed 310
Helix 5	AA5	A	565	576	Right-handed alpha
Helix 6	AA6	A	577	578	Right-handed 310
Helix 7	AA7	A	579	583	Right-handed 310
Helix 8	AA8	A	595	611	Right-handed alpha
Helix 9	AA9	A	613	620	Right-handed alpha
Helix 10	AB1	A	627	641	Right-handed alpha
Helix 11	AB2	B	392	401	Right-handed alpha
Helix 12	AB3	B	432	436	Right-handed 310
Helix 13	AB4	B	484	488	Right-handed 310
Helix 14	AB5	B	531	535	Right-handed 310
Helix 15	AB6	B	565	576	Right-handed alpha
Helix 16	AB7	B	579	583	Right-handed 310
Helix 17	AB8	B	595	611	Right-handed alpha
Helix 18	AC9	B	613	620	Right-handed alpha
Helix 19	AC1	B	627	641	Right-handed alpha

There are 6 sheets in PDB entry 7SJY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	587	588	first strand
Strand 2	A	451	461	anti-parallel
Strand 3	A	466	471	anti-parallel
Strand 4	A	428	431	anti-parallel
Strand 5	A	415	425	anti-parallel
Strand 6	A	403	409	anti-parallel
Strand 7	A	441	445	anti-parallel
Strand 8	A	451	461	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	499	first strand
Strand 2	A	505	514	anti-parallel
Strand 3	A	524	526	anti-parallel
Strand 4	A	561	564	anti-parallel
Strand 5	A	546	550	anti-parallel
Strand 6	A	538	540	anti-parallel
Strand 7	A	493	499	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	655	first strand
Strand 2	A	659	672	anti-parallel
Strand 3	A	679	690	anti-parallel
Strand 4	A	693	702	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	587	588	first strand
Strand 2	B	451	461	anti-parallel
Strand 3	B	466	471	anti-parallel
Strand 4	B	428	431	anti-parallel
Strand 5	B	415	425	anti-parallel
Strand 6	B	403	409	anti-parallel
Strand 7	B	441	445	anti-parallel
Strand 8	B	451	461	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	493	498	first strand
Strand 2	B	506	514	anti-parallel
Strand 3	B	524	526	anti-parallel
Strand 4	B	561	564	anti-parallel
Strand 5	B	546	550	anti-parallel
Strand 6	B	538	540	anti-parallel
Strand 7	B	493	498	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	642	655	first strand
Strand 2	B	659	672	anti-parallel
Strand 3	B	679	690	anti-parallel
Strand 4	B	693	702	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7SJY

Analysis of interatomic Contacts of Structural Units in PDB entry:
7SJY