Analysis of interatomic Contacts of Structural Units in PDB entry:
7SK8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SK8 entry

There are 6 chains in PDB entry 7SK8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 26ILE 331
B
 TYR 7LYS 68
C
 ILE 3THR 110
D
 GLU 4SER 130
E
 ASP 2LYS 108
F
 VAL 5SER 129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 7SK8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 72Right-handed alpha
Helix 2
AA2
A
73 75Right-handed 310
Helix 3
AA3
A
80 96Right-handed alpha
Helix 4
AA4
A
96 106Right-handed alpha
Helix 5
AA5
A
113 148Right-handed alpha
Helix 6
AA6
A
153 182Right-handed alpha
Helix 7
AA7
A
205 219Right-handed alpha
Helix 8
AA8
A
221 242Right-handed alpha
Helix 9
AA9
A
243 249Right-handed alpha
Helix 10
AB1
A
251 280Right-handed alpha
Helix 11
AB2
A
286 305Right-handed alpha
Helix 12
AB3
A
305 316Right-handed alpha
Helix 13
AB4
A
319 331Right-handed alpha
Helix 14
AB5
B
19 23Right-handed 310
Helix 15
AB6
B
55 68Right-handed alpha
Helix 16
AB7
D
31 34Right-handed 310
Helix 17
AB8
D
90 94Right-handed 310
Helix 18
AB9
E
80 84Right-handed 310
Helix 19
AC1
F
31 35Right-handed 310
Helix 20
AC2
F
90 94Right-handed 310
Back to top of page

There are 14 sheets in PDB entry 7SK8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 33first strand
Strand 2
B
25 30parallel
Strand 3
B
37 42anti-parallel
Strand 4
B
47 49anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 79first strand
Strand 2
F
111 112anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 187first strand
Strand 2
A
194 198anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 6first strand
Strand 2
C
21 26anti-parallel
Strand 3
C
71 76anti-parallel
Strand 4
C
63 65anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 14first strand
Strand 2
C
103 107parallel
Strand 3
C
86 91anti-parallel
Strand 4
C
34 39anti-parallel
Strand 5
C
46 50anti-parallel
Strand 6
C
54 55anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 14first strand
Strand 2
C
103 107parallel
Strand 3
C
86 91anti-parallel
Strand 4
C
98 99anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 10first strand
Strand 2
D
20 28anti-parallel
Strand 3
D
81 87anti-parallel
Strand 4
D
71 76anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 14first strand
Strand 2
D
122 125parallel
Strand 3
D
95 102anti-parallel
Strand 4
D
36 42anti-parallel
Strand 5
D
48 55anti-parallel
Strand 6
D
62 63anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 14first strand
Strand 2
D
122 125parallel
Strand 3
D
95 102anti-parallel
Strand 4
D
117 118anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
5 8first strand
Strand 2
E
20 26anti-parallel
Strand 3
E
71 76anti-parallel
Strand 4
E
63 66anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
104 105parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
46 49first strand
Strand 2
E
34 39anti-parallel
Strand 3
E
86 91anti-parallel
Strand 4
E
98 99anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
6 10first strand
Strand 2
F
20 28anti-parallel
Strand 3
F
81 87anti-parallel
Strand 4
F
71 76anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
61 63first strand
Strand 2
F
48 54anti-parallel
Strand 3
F
36 42anti-parallel
Strand 4
F
95 102anti-parallel
Strand 5
F
124 126anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il