Analysis of interatomic Contacts of Structural Units in PDB entry:
7SL4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7SL4 entry

There are 2 chains in PDB entry 7SL4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 3	VAL 907
B	HIS 1	THR 595

There are 33 helices in PDB entry 7SL4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	24	Right-handed 310
Helix 2	AA2	A	43	48	Right-handed alpha
Helix 3	AA3	A	132	137	Right-handed alpha
Helix 4	AA4	A	255	268	Right-handed alpha
Helix 5	AA5	A	324	328	Right-handed 310
Helix 6	AA6	A	352	358	Right-handed alpha
Helix 7	AA7	A	435	447	Right-handed alpha
Helix 8	AA8	A	496	498	Right-handed 310
Helix 9	AA9	A	641	645	Right-handed 310
Helix 10	AB1	A	694	716	Right-handed alpha
Helix 11	AB2	A	865	871	Right-handed alpha
Helix 12	AB3	B	16	24	Right-handed 310
Helix 13	AB4	B	42	46	Right-handed 310
Helix 14	AB5	B	132	137	Right-handed alpha
Helix 15	AB6	B	150	153	Right-handed 310
Helix 16	AB7	B	221	225	Right-handed 310
Helix 17	AB8	B	255	268	Right-handed alpha
Helix 18	AB9	B	323	328	Right-handed alpha
Helix 19	AC1	B	329	331	Right-handed 310
Helix 20	AC2	B	350	358	Right-handed alpha
Helix 21	AC3	B	378	382	Right-handed 310
Helix 22	AC4	B	435	447	Right-handed alpha
Helix 23	AC5	B	448	452	Right-handed 310
Helix 24	AC6	B	496	500	Right-handed 310
Helix 25	AC7	B	640	645	Right-handed 310
Helix 26	AC8	B	707	716	Right-handed alpha
Helix 27	AC9	B	865	872	Right-handed alpha
Helix 28	AD1	C	8	19	Right-handed alpha
Helix 29	AD2	D	8	18	Right-handed alpha
Helix 30	AD3	E	2	7	Right-handed alpha
Helix 31	AD4	E	12	20	Right-handed 310
Helix 32	AD5	F	2	7	Right-handed alpha
Helix 33	AD6	F	12	19	Right-handed alpha

There are 29 sheets in PDB entry 7SL4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	28	38	parallel
Strand 3	A	56	57	parallel
Strand 4	A	81	82	parallel
Strand 5	A	111	112	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	28	38	parallel
Strand 3	A	60	66	parallel
Strand 4	A	93	98	parallel
Strand 5	A	117	122	parallel
Strand 6	A	144	148	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	233	first strand
Strand 2	A	236	238	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	248	first strand
Strand 2	A	252	254	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	293	first strand
Strand 2	A	302	303	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	312	first strand
Strand 2	A	335	336	parallel
Strand 3	A	363	364	parallel
Strand 4	A	387	388	parallel
Strand 5	A	420	421	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	321	first strand
Strand 2	A	339	342	parallel
Strand 3	A	368	371	parallel
Strand 4	A	398	403	parallel
Strand 5	A	425	429	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	473	first strand
Strand 2	A	583	585	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	479	first strand
Strand 2	A	486	489	anti-parallel
Strand 3	A	553	554	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	531	534	first strand
Strand 2	A	500	509	anti-parallel
Strand 3	A	562	572	anti-parallel
Strand 4	A	588	592	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	601	606	first strand
Strand 2	A	613	618	anti-parallel
Strand 3	A	769	772	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	761	764	first strand
Strand 2	A	629	636	anti-parallel
Strand 3	A	780	788	anti-parallel
Strand 4	A	801	806	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	821	825	first strand
Strand 2	A	829	833	anti-parallel
Strand 3	A	874	877	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	859	864	first strand
Strand 2	A	844	851	anti-parallel
Strand 3	A	887	892	anti-parallel
Strand 4	A	895	896	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	882	884	first strand
Strand 2	A	905	907	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	33	38	parallel
Strand 3	B	61	66	parallel
Strand 4	B	93	98	parallel
Strand 5	B	117	122	parallel
Strand 6	B	144	148	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	B	81	82	parallel
Strand 3	B	111	112	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	173	first strand
Strand 2	B	178	180	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	248	first strand
Strand 2	B	252	254	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	292	294	first strand
Strand 2	B	301	303	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	321	first strand
Strand 2	B	335	342	parallel
Strand 3	B	363	364	parallel
Strand 4	B	387	388	parallel
Strand 5	B	420	421	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	321	first strand
Strand 2	B	335	342	parallel
Strand 3	B	368	371	parallel
Strand 4	B	400	403	parallel
Strand 5	B	428	429	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	479	first strand
Strand 2	B	485	488	anti-parallel
Strand 3	B	553	555	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	530	534	first strand
Strand 2	B	502	509	anti-parallel
Strand 3	B	563	571	anti-parallel
Strand 4	B	588	591	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	601	607	first strand
Strand 2	B	613	618	anti-parallel
Strand 3	B	769	772	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	761	764	first strand
Strand 2	B	629	636	anti-parallel
Strand 3	B	780	790	anti-parallel
Strand 4	B	796	797	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	761	764	first strand
Strand 2	B	629	636	anti-parallel
Strand 3	B	780	790	anti-parallel
Strand 4	B	803	806	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	820	824	first strand
Strand 2	B	830	834	anti-parallel
Strand 3	B	874	876	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	858	864	first strand
Strand 2	B	844	852	anti-parallel
Strand 3	B	886	892	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7SL4

Analysis of interatomic Contacts of Structural Units in PDB entry:
7SL4