Analysis of interatomic Contacts of Structural Units in PDB entry:
7SL8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7SL8 entry

There are 2 chains in PDB entry 7SL8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 20PHE 672
B
 VAL 4HIS 121
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 7SL8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 49Right-handed alpha
Helix 2
AA2
A
67 76Right-handed alpha
Helix 3
AA3
A
85 94Right-handed alpha
Helix 4
AA4
A
96 98Right-handed 310
Helix 5
AA5
A
99 115Right-handed alpha
Helix 6
AA6
A
115 123Right-handed alpha
Helix 7
AA7
A
127 134Right-handed alpha
Helix 8
AA8
A
138 157Right-handed alpha
Helix 9
AA9
A
157 174Right-handed alpha
Helix 10
AB1
A
176 195Right-handed alpha
Helix 11
AB2
A
201 227Right-handed alpha
Helix 12
AB3
A
229 238Right-handed alpha
Helix 13
AB4
A
252 257Right-handed alpha
Helix 14
AB5
A
275 294Right-handed alpha
Helix 15
AB6
A
296 303Right-handed alpha
Helix 16
AB7
A
306 321Right-handed alpha
Helix 17
AB8
A
323 329Right-handed alpha
Helix 18
AB9
A
329 339Right-handed alpha
Helix 19
AC1
A
347 355Right-handed alpha
Helix 20
AC2
A
361 363Right-handed 310
Helix 21
AC3
A
364 371Right-handed alpha
Helix 22
AC4
A
378 409Right-handed alpha
Helix 23
AC5
A
409 414Right-handed alpha
Helix 24
AC6
A
418 440Right-handed alpha
Helix 25
AC7
A
440 445Right-handed alpha
Helix 26
AC8
A
452 477Right-handed alpha
Helix 27
AC9
A
481 505Right-handed alpha
Helix 28
AD1
A
518 523Right-handed alpha
Helix 29
AD2
A
527 548Right-handed alpha
Helix 30
AD3
A
552 556Right-handed 310
Helix 31
AD4
A
638 666Right-handed alpha
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There are 3 sheets in PDB entry 7SL8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
A
249 250anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 9first strand
Strand 2
B
19 27anti-parallel
Strand 3
B
79 85anti-parallel
Strand 4
B
69 73anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 15first strand
Strand 2
B
114 119parallel
Strand 3
B
93 96anti-parallel
Strand 4
B
39 41anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il